Flavobacterium anhuiense: BB050_00656
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Entry
BB050_00656 CDS
T04718
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
fjg
Flavobacterium anhuiense
Pathway
fjg03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
fjg00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
BB050_00656 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
fjg03021
]
BB050_00656 (rpoC)
03400 DNA repair and recombination proteins [BR:
fjg03400
]
BB050_00656 (rpoC)
Enzymes [BR:
fjg01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
BB050_00656 (rpoC)
Transcription machinery [BR:
fjg03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
BB050_00656 (rpoC)
DNA repair and recombination proteins [BR:
fjg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
BB050_00656 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
AOC93805
UniProt:
A0AAC9GGV5
LinkDB
All DBs
Position
complement(779501..783805)
Genome browser
AA seq
1434 aa
AA seq
DB search
MNNRNNKDKNPVKRFNKISIGLASPESILKESRGEVLKPETINYRTHKPERDGLFCERIF
GPVKDFECACGKYKRIRYKGIICDRCGVEVTEKKVRRDRVGHINLVVPIAHIWYFRSLPN
KIGYILGLPSKKLDMIIYYERYVVIQPGIAKNADGESLQRLDFLTEEEYLNILDTLPQEN
QYLDDLDPNKFVAKMGAECIMDLLARIDLDALSYELRHSANNETSKQRKTEALKRLQVVE
SFRESNENRENRPEWMIMKVVPVIPPELRPLVPLDGGRFATSDLNDLYRRVIIRNNRLKR
LMEIKAPEVILRNEKRMLQESVDSLFDNTRKASAVKTESNRPLKSLSDSLKGKQGRFRQN
LLGKRVDYSARSVIVVGPELKLYECGLPKDMASELYKPFVIRKLIERGIVKTVKSAKKII
DKKEPVVWDILENVIKGHPVLLNRAPTLHRLGIQAFQPKLIEGKAIQLHPLVCTAFNADF
DGDQMAVHLPLGPEAILEAQLLMLASHNILNPANGAPITVPSQDMVLGLYYMTKERISTE
DHKIIGQDLTFYSAEEVNIALNEGRLELNARVKIRAKDFNDNGELVYKIIQTTAGRVLFN
EVVPEAAGYINDVLTKKNLRDIIGHILSVTDVPTTAAFLDNMKDMGYKFAFRGGLSFSLG
DIRIPEQKTKLIADAREQVEGISTNYNMGLITNNERYNQVIDVWTSANAQLTELAMKNIR
EDQQGFNSVYMMLDSGARGSKEQIRQLTGMRGLMAKPKKSTAGGGEIIENPILSNFKEGL
SILEYFISTHGARKGLADTALKTADAGYLTRRLHDVSQDVIVNIEDCGTLRGVEVAALKK
NEEIVESLGERILGRVALQDVINPLTNEIMVRSGEQITESIVKTIEASPIEKVEVRSPLT
CEALKGICAKCYGRNLATGKMTQRGEAVGVIAAQSIGEPGTQLTLRTFHVGGVAGGISEE
SSIVTRFNGRLEIEDLKTVKGEDSEGNEVDIVVSRSTELKLIDEGTGIVLNTHNIPYGSS
IFVNDGDVVTKGTVICKWDPYNGVIVSEFTGKIAYEDLEQGQSYMVEIDEQTGFQEKVIS
EARNKKLIPTLLVYGKEGELIRSYNLPVGAHLMVENGEKIKAGKVLVKIPRRSSKAGDIT
GGLPRITELLEARNPSNPAVVSEIDGVVSFGKIKRGNREIVIESKFGEVKKYLVKLSSQI
LVQENDFVRAGVPLSDGAITPDDILRIQGPAAVQQYLVNEIQEVYRLQGVKINDKHFEVV
IRQMMRKVKVEDPGDTLFLEDQLIHTKDFILQNDKLYGMKVVEDAGDSSVLKPGQIITPR
ELRDENSLLKRTDKNLVVARDVITATATPVLQGITRASLQTKSFISAASFQETTKVLNEA
AVAGKVDDLEGLKENVIVGHRIPAGTGMREYDNTIVGSKDDYNEMMANKEEYIY
NT seq
4305 nt
NT seq
+upstream
nt +downstream
nt
atgaataatagaaacaataaagataagaatccagtaaaaagatttaacaaaatctctatt
ggattggcttcaccagaatctatcttgaaagaatcaagaggagaggttttaaagccagaa
acaatcaactatagaactcataaaccagagcgtgacggacttttctgcgaaagaatcttc
ggaccagtaaaagatttcgaatgtgcttgtggtaagtataaaagaattcgttacaaaggt
atcatctgtgaccgttgtggtgttgaagttacagagaaaaaagtacgtcgtgatagagta
ggacacatcaaccttgttgtgccaattgctcacatctggtacttccgttctcttccaaac
aaaattggttatatccttggtcttccatctaagaaattagatatgattatttactatgaa
agatacgtagtaattcagccaggtatcgctaaaaatgcagatggagaatcattacaaaga
ttagatttcttaactgaagaagaatacttaaacattttagatactcttccgcaagaaaat
caatatttagatgatttagatccaaataaatttgttgccaaaatgggagcagagtgtatt
atggatttattagctcgtattgacctagatgctttatcttatgaattaagacacagtgct
aacaacgagacatctaaacaaagaaaaactgaggctttaaaaagattacaagttgttgaa
tctttccgtgagtctaacgaaaaccgtgaaaaccgtccagaatggatgattatgaaagtg
gttccagttattccaccagaattacgtccgcttgtgccacttgatggaggtcgttttgca
acttcagatttgaacgacttataccgtcgtgtaatcatccgtaacaaccgtttgaaaaga
ttaatggagattaaagctccagaagttatcttaagaaacgagaaacgtatgttgcaagaa
tctgtagattcattattcgataacactcgtaaagcttctgctgttaaaacagaatctaac
agaccattaaaatcattatctgactcattaaaaggtaaacaaggacgtttccgtcaaaac
cttttaggaaaacgtgtggattattctgctcgttcggtaatcgtcgttggtccagagtta
aaattatatgagtgcggattgccaaaagatatggcttctgagttatacaaaccattcgtt
atccgtaaattgatcgaaagaggtattgttaaaacagtaaaatctgctaagaaaatcatt
gacaaaaaagagcctgtagtttgggatatccttgaaaatgtaattaaaggacacccagta
ttactgaaccgtgctcctactttgcacagacttggtattcaggctttccaaccaaaatta
attgaaggaaaagcgatccagttacacccattagtatgtacggcattcaacgccgatttc
gatggtgaccagatggcggttcacctgccattagggccagaagctatcttagaggcacaa
ttattaatgttggcttctcacaatatattgaaccctgcaaatggtgctccaattactgta
ccttctcaggacatggtcttgggtctatactatatgaccaaagagcgtatttctacagaa
gatcacaaaattatcggtcaggatttaactttttattctgctgaagaagtaaatattgca
ttaaacgaaggaagattagaattgaatgctcgtgtgaaaattagagctaaagattttaat
gataacggagagttagtgtacaaaatcatccagacaactgcaggacgtgtattatttaac
gaagtagtaccagaagcagctggatatataaatgacgtattgactaagaaaaaccttaga
gatattatcggacacattttaagtgtgactgatgtacctacaacggcagctttcttggat
aatatgaaagatatggggtataaattcgcatttagaggaggtttatcattctctttaggt
gatattagaattccagaacaaaaaactaagttaattgcagatgccagagagcaagttgaa
ggtatctcaactaactataacatgggtcttatcacaaataacgagcgttacaaccaagtt
attgacgtatggacttcagcaaatgctcagttaacagagttagcaatgaaaaatattaga
gaagaccagcaaggtttcaactctgtatatatgatgcttgactctggggcgaggggttct
aaggagcagattcgtcagttaactggtatgcgtggtttgatggctaagcctaaaaaatct
actgctggtggtggtgagattattgaaaacccgattctttctaactttaaggaaggtctt
tcgattcttgagtacttcatttctactcacggtgctcgtaaaggtcttgcggatacggct
cttaaaacagccgatgctggttacttgacaagaaggcttcatgacgtttctcaagatgtt
attgttaacatcgaggattgtggaactttaagaggtgttgaagttgctgccttgaagaaa
aatgaggaaatcgttgaatctttaggtgagagaatcttaggacgtgttgcattacaagac
gttatcaatcctcttactaacgagatcatggttagatctggagagcaaatcactgaatca
attgttaagactatcgaagcgtctccaattgagaaagttgaagttagatctccattaact
tgtgaagctttaaaaggtatttgtgcgaaatgttacggtagaaacttagctactggtaag
atgacacaaagaggtgaagctgtcggagttattgcagctcagtctattggggagccaggt
acacagttaacacttcgtacgttccacgttggaggggttgctggaggtatctctgaagag
tctagtattgttacaagattcaacggtagacttgaaatcgaagatttaaaaacagttaaa
ggtgaagatagtgaaggtaacgaagttgatatcgttgtatcacgttctactgagttgaaa
ttaattgacgaaggaaccggaattgttttaaatacgcataacattccttacggatctagt
atttttgtaaatgatggagatgtagttactaaaggaactgtaatctgtaaatgggatcca
tataacggtgtaattgtttctgagtttacgggtaagattgcttacgaagatttagaacaa
ggacaatcgtacatggttgaaatcgatgagcagactggtttccaagaaaaagtaatttct
gaggctagaaacaaaaaattaatcccaactttattagtttatggtaaagaaggtgaattg
attcgttcatacaacttaccagtaggtgcgcacttaatggttgaaaatggtgagaaaatt
aaagcaggtaaagtattagtaaaaatcccacgtcgttcttctaaagcgggcgatatcacg
ggaggtttaccaagaattactgagcttcttgaggctcgtaacccttcaaacccagcagtt
gtatctgaaattgatggtgttgtatcattcggtaaaattaagagaggtaaccgtgagatt
gttatcgagtctaaatttggtgaggttaaaaagtatctagtgaaactttcaagccaaatc
ttagtacaagaaaatgacttcgtaagagcgggagttccattgtctgatggtgcaattaca
ccagatgatatcttaagaattcaaggtccggctgctgttcaacagtacttggtaaatgaa
attcaagaggtttaccgtttacaaggggtaaaaatcaatgacaaacacttcgaggttgta
attcgtcaaatgatgcgtaaagttaaagttgaagatccaggagatactctattcttagaa
gatcaattgatccacactaaagactttatccttcaaaatgataaattatatggtatgaaa
gtggttgaagatgctggagattcttcagtattaaaaccaggtcaaatcattacgcctcgt
gagttacgtgatgaaaattcattattgaaacgtacagataaaaatcttgttgtagcaagg
gatgtaattactgcaactgcaacgccagttctacaaggtattacaagagcttcgttacaa
actaaatcattcatttctgcggcttcattccaggagacaacgaaagtacttaacgaagct
gcagtagctggtaaagtagatgatctagaaggattaaaagaaaacgtaatcgttggacac
agaatccctgccggaactggtatgagagaatacgataacacaatcgtaggatctaaagat
gattacaatgaaatgatggctaataaagaagaatacatttattaa
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