Flavobacterium anhuiense: BB050_01409
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Entry
BB050_01409 CDS
T04718
Symbol
mfd
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
fjg
Flavobacterium anhuiense
Pathway
fjg03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
fjg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BB050_01409 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
fjg03400
]
BB050_01409 (mfd)
Enzymes [BR:
fjg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BB050_01409 (mfd)
DNA repair and recombination proteins [BR:
fjg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
BB050_01409 (mfd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
RecG_dom3_C
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AOC94539
UniProt:
A0AAC9D0Q0
LinkDB
All DBs
Position
complement(1631261..1634626)
Genome browser
AA seq
1121 aa
AA seq
DB search
MSKNALYTTYDNLPKAEQIAKSLLEGNQVKMNISGLLGSAVSFIIRSVFRKTELPFLIVL
DNKEEAAYYLNDLEQMIGEQDVLFYPASFRRPYQIDETDNANVLLRAEVLNRINSRKKPA
VIVTYPEALFEKVVTRRELDKNTLKVALNDKISIDFINEVLFEYEFKRVDFITEPGEFSV
RGGIVDVFSFSNDHPYRIEFFGNEVDSIRTFDVETQLSVETHKKITIIPNVENKLFQENR
ESFLDYIAEKTVLFIQNTEGLFSQLDKQFARAEEAFEKLSKEIKHATPEQLFLNQASFIK
RALDFSVVELASRPVFKTTKKFEFHIQPQPSFNKQFDLLLNNLSDNHFNGYVNYLFCSNE
TQAKRFHDIFESLDEANSENIRKQYHTIVLPLYQGFIDEENQITAYTDHQIFERYHKFNI
KNGYSKKQNITLKELTALSVGDYVTHIDHGIGKFGGLQKIQVEGKTQEAIKLVYADNDIV
YVSIHSLHKISKYNGKDGTPPKIYKLGSNAWKVLKQKTKARVKHIAFNLIQLYAKRRLEK
GFQFAPDSYLQNELESSFIYEDTPDQMKSTAEVKADMESDRPMDRLVCGDVGFGKTEVAI
RAAFKAVDNSKQVAVLVPTTILAYQHYRTFSERLKDMPVSIGYLNRFRTAKQKAQTLKDL
AEGKLDIVIGTHQLVNKNVVFKDLGLLIVDEEQKFGVNVKDKLKTIAANVDTLTLTATPI
PRTLQFSLMAARDLSVITTPPPNRYPIETNVVGFNEEIIRDAISYEIQRNGQVFFINNRI
ENIKEVAGMIQRLVPNARVGIGHGQMDGAKLEELMLGFMNGDFDVLVATTIIESGLDVPN
ANTIFINNANNFGLSDLHQMRGRVGRSNKKAFCYFICPPYSSMTEDARKRIQALEQFSEL
GSGFNIAMKDLEIRGAGDLLGGEQSGFINEIGFDTYQKIMNEAIEELKENEFKELYPEEN
DIDTKEYVKDIQIDADFELLFPDEYINNVSERLVLYNELGAIKDEAGLQEFEKKLIDRFG
PLPKQAVALLNSIRIKWIATKVGIEKLVLKQGKMIGYFVSDQQSDYYQSVKFRNVLNFVQ
KHATLCKMKEKQTVNGLRLLLTFENVKSIKRAFELMELFEE
NT seq
3366 nt
NT seq
+upstream
nt +downstream
nt
ttgagtaaaaacgccttatatactacatacgataatctgccaaaagcagagcagattgcc
aaaagtttactggaaggaaatcaggtaaaaatgaatatcagcggattgttgggatctgct
gtttcatttattatccgttccgtttttaggaaaacagaactgccttttttgattgtttta
gacaacaaagaagaagctgcgtattacctaaacgatttggaacaaatgattggagaacaa
gatgtattgttttatccagcttcatttcgacgtccgtatcaaattgacgaaaccgataat
gccaatgttctgcttcgcgctgaggttttaaaccgaatcaattctagaaaaaaaccggct
gtaattgttacctatccagaagcgctttttgaaaaagtagttaccagaagagaactagat
aaaaacactttaaaagtggctttaaatgataaaatttcaattgattttatcaacgaagtt
ttattcgaatatgaattcaaaagggtagattttatcacagaacctggagaattttcagtt
cgcggtggaattgtcgatgtgttttctttttcaaatgatcatccgtatcgaattgagttt
tttggaaatgaagtagacagcatcagaacttttgatgttgaaacacaattatcggtagaa
acacataaaaaaatcacgattatcccgaatgtcgagaataaactttttcaggaaaatcgt
gaaagtttcttagactatattgcagagaaaaccgttcttttcattcaaaataccgaaggg
ctttttagtcaattagataaacaatttgcaagagcagaagaagcttttgagaaattgtcg
aaagagataaaacatgccacgccagagcaattgtttttaaatcaagcgtcatttataaaa
cgagcattggatttttcggttgtagaattggcttcaagaccagtttttaaaaccactaaa
aaattcgaattccatattcagcctcagccttctttcaacaaacaatttgatttattgctg
aataatttgagcgataatcattttaacggatatgtgaattatctgttttgttcaaatgaa
acgcaggcgaaacgttttcacgatatttttgaaagcttagacgaagccaattcagaaaat
atcagaaagcaatatcataccattgtcttgcctttataccaaggttttattgatgaagaa
aatcagataacggcttataccgatcatcagatttttgagcgttatcataaattcaacatc
aaaaatggatattctaaaaagcaaaatatcactttaaaagaattaactgcgctttctgta
ggagattatgtaacgcatatcgatcatggaattggaaaatttggcggactgcagaaaatt
caagttgaaggcaaaacgcaagaagcgataaaactggtttatgccgataatgatattgtg
tatgtgagcattcactcgctccataaaatctcgaaatacaatggaaaggacggaacgcca
ccgaaaatctataaacttggatcgaacgcttggaaggttttaaaacagaaaaccaaagcg
cgtgtcaaacatattgcgttcaacttgattcagctgtatgcgaaacgccgtttggaaaaa
ggttttcagtttgcgccagacagttatcttcaaaacgaattggaaagttcgtttatttat
gaagatactccagatcaaatgaaatcaacggcagaagtgaaagccgatatggaaagcgat
cgcccaatggatcgtttggtttgtggtgatgttggttttggaaaaacagaggttgccatt
cgtgcggcttttaaagccgttgacaatagcaaacaagttgccgttttggttccgacaacc
attttggcgtatcagcattatagaactttttctgagcgattgaaagatatgccagtttca
attggttacttgaaccgatttagaacggcgaaacaaaaagcgcagactttaaaagattta
gccgaaggaaaactagatatcgtaattggaacgcatcagttagtaaacaaaaatgtggtt
tttaaagatcttggtttattgattgttgatgaggaacaaaaatttggagtaaacgtaaaa
gataaattaaaaactattgccgcaaatgtcgatacattgactttgacagcaacgccaatt
ccaagaactttacagttttcattgatggctgctcgagatttatcggtaattacaacgcct
ccaccaaatcgttatccgattgaaacgaatgtggttggttttaatgaagaaattattcgt
gacgcgatttcgtatgaaattcagagaaacggacaagttttctttatcaataatagaatt
gaaaatataaaagaagtggcaggaatgattcagcgtttggttccaaatgcaagggtcggt
attggtcacgggcaaatggacggagcaaaactcgaagaattgatgttaggtttcatgaat
ggagattttgatgttttggtggcaaccacaatcatcgaaagcggtttggacgtaccaaat
gcgaatacaattttcatcaataatgcgaacaattttggactttcagatttgcatcaaatg
cgaggtcgagtaggaagaagcaacaaaaaggcattttgttatttcatctgtccgccatat
tcatcgatgaccgaagatgccagaaaacgtattcaggcattagagcaattcagcgaattg
ggaagcggtttcaacattgccatgaaagatcttgaaattcgtggtgcaggagatttatta
ggaggtgaacaaagtggtttcatcaatgaaattggttttgatacgtatcagaaaatcatg
aacgaagcgatcgaagaattgaaggaaaacgaattcaaagaattgtatccagaggaaaat
gatattgacacaaaagaatatgtaaaagacattcaaatcgatgccgattttgagctttta
ttcccagatgaatatatcaataacgtttcggaacgtttggttttatacaacgaattgggc
gctataaaagacgaagctggtctacaggaatttgagaaaaaactaattgaccgtttcggt
ccattgccaaaacaagctgttgcattgttaaacagcatcagaatcaaatggattgcaacg
aaagttggaatcgagaaattggtcttgaaacaaggtaaaatgattggctattttgtatct
gatcagcaatctgattattatcaatcggtgaagtttagaaatgtcttgaacttcgttcaa
aaacatgcgacgctttgcaaaatgaaagaaaaacaaaccgtaaacggattacgtttatta
ttgacttttgaaaatgtgaagtcaattaaacgagctttcgagttgatggagttgtttgag
gagtaa
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