Flavobacterium anhuiense: BB050_02854
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Entry
BB050_02854 CDS
T04718
Symbol
rtcB_1
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
fjg
Flavobacterium anhuiense
Brite
KEGG Orthology (KO) [BR:
fjg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
fjg03016
]
BB050_02854 (rtcB_1)
Enzymes [BR:
fjg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
BB050_02854 (rtcB_1)
Transfer RNA biogenesis [BR:
fjg03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
BB050_02854 (rtcB_1)
Prokaryotic type
tRNA splicing ligases
BB050_02854 (rtcB_1)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
AOC95948
UniProt:
A0AAC9GJ31
LinkDB
All DBs
Position
3211589..3213010
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AA seq
473 aa
AA seq
DB search
MKTQINGTDILELGFPEGKMIGIALKINSKRNGFTRDEMIAHYKNVLETPENYIDDKIFS
KLAVALIEKSNEKPEDFIALNQNPNAYSAYGLDHIEDGARKQMEVAMKLPVTVAGALMPD
AHQGYGLPIGGVLATKNAIIPYGVGVDIGCRMALSVYDIPEDFYFENEAKFKKELIANSI
FGAGHGFHGQYKSDHAVLENETFNMNPFVKNLKDKAWSQLGSSGGGNHFVEFGIMEFVQD
DAVLNIPKGKYVALLTHSGSRGMGATIAGHYTKIAKDECKLPEVAKNLAYLDMNSQLGQE
YWLAMNLAGDYASACHEIIHNKMERALGATILAKVENHHNFAWKETWNGEEVIVHRKGAT
PAGKGVMGIIPGSMTAPGFLVRGKGEENAINSASHGAGRQMSRTQAIKNITQTEMKSILS
DHGVTLIGAGLDEAPMAYKDINQVMEAQKDLVDVVAKFTPKLVRMADDGSRED
NT seq
1422 nt
NT seq
+upstream
nt +downstream
nt
atgaaaacacaaataaacggtacagatatattagaattaggattcccagaaggaaaaatg
atcggaatcgcattaaaaataaacagcaaaagaaacggattcacaagagacgaaatgatc
gctcattacaaaaacgtcttagaaactccagagaattatattgacgataaaatcttcagc
aaattggctgtagctttgatcgaaaaatcgaatgaaaaaccagaagatttcattgcattg
aatcaaaatccgaatgcgtattcggcttacggattggatcatatcgaagatggagccaga
aagcaaatggaagttgccatgaagctgcctgttacagttgcgggagctttaatgccagac
gcacaccaaggttacggattaccgattggcggagttttggccacaaaaaatgctattatt
ccgtatggtgttggagttgatattgggtgtagaatggcattgtcggtttatgatattcca
gaagatttttattttgaaaatgaagccaaattcaaaaaagaattaatcgcgaattctatt
tttggagcaggtcacggatttcacggtcagtacaaatcagatcatgcggttttggagaac
gaaactttcaatatgaatccgtttgtgaagaacttgaaagataaagcttggtcgcaatta
ggttcttcgggtggtggaaatcactttgtggaattcggaatcatggaatttgtgcaagac
gatgcggttttaaatatcccaaaaggaaaatacgtcgctttgttaacgcattctggttca
cgaggaatgggagcaaccattgctggacattatactaaaattgccaaagacgaatgcaaa
cttccagaagtggcaaaaaacttggcgtatttagatatgaattcacaattgggtcaggaa
tattggttggcgatgaatttggcgggagattacgcttcggcttgtcacgagattatccac
aacaaaatggaacgcgctttgggggcaacgattttagcaaaagtcgaaaaccaccataat
tttgcctggaaagaaacctggaacggcgaagaagtgatcgtgcatagaaaaggcgcaact
ccagccggaaaaggcgttatgggaatcattccgggaagtatgaccgcaccgggatttttg
gtgagaggaaaaggcgaggagaacgccattaattcggcttcgcatggagcaggaagacaa
atgagcagaacccaagccataaaaaacatcacacaaactgaaatgaaatcgatcctgagt
gatcatggcgtgacgcttatcggagcaggccttgacgaagccccaatggcgtataaagat
atcaatcaggtgatggaagcgcagaaagatttagtagatgtggtagcgaagtttacacca
aaactggttagaatggcggatgatggaagccgtgaagactaa
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