Flavobacterium johnsoniae UW101: Fjoh_0137
Help
Entry
Fjoh_0137 CDS
T00508
Name
(GenBank) ATP-dependent DNA helicase, RecQ family
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
fjo
Flavobacterium johnsoniae UW101
Pathway
fjo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fjo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Fjoh_0137
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fjo03019
]
Fjoh_0137
03400 DNA repair and recombination proteins [BR:
fjo03400
]
Fjoh_0137
Enzymes [BR:
fjo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Fjoh_0137
Messenger RNA biogenesis [BR:
fjo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Fjoh_0137
DNA repair and recombination proteins [BR:
fjo03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Fjoh_0137
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
DnaD_N
DUF1949
HTH_69
HTH_9
NirdL-like_HTH
MarR
Motif
Other DBs
NCBI-ProteinID:
ABQ03175
UniProt:
A5FNN6
LinkDB
All DBs
Position
144138..146033
Genome browser
AA seq
631 aa
AA seq
DB search
MLDAQEILLKYWKHSSFRPLQKEIIDSVLEGQDTFALLPTGGGKSICFQVPAMMREGICL
VISPLIALMKDQVANLQKRDIKAIALTGGIHTEEIIDLLDNCQFGNYKFLYLSPERLQSD
WILERIKNLPINLIAIDEAHCVSQWGHDFRPAYLKISELKKYFPKIPFLALTATATPRVV
EDIKTELGLKDTKLFQQSFERKNIAYMVFEVEDKLYRVEQILKKNPQPSIIYVRNRKSCL
NMSTQLQSLGFRATYYHGGLSAQEKDKNMQLWMSEQAQVIVATNAFGMGIDKDNVKTVIH
TQLPENLENYYQESGRAGRNGEKAFSVLLFNNSDATQTEQQFINVLPDKKFLKTIFIKLC
NYFQIAYGEGLDDSYSFKMNHFCNKYDFPTLKTYNALQFLNQQGIITMSQEFSEKVTMQF
LIESKEVIRYMSLNPNDEEIILAILRTYPGIHEMKTPLNLSLIAKKSNHSEEQVTALLEK
LKEKEIIEYKSKNNDATILFNEVREDDLTINRVSKYLEKQNKLKRDQLSSVLYYIKEDKT
CKNRLVLDYFGEETKVNCGVCSYCITQKGKITEADSIADKILHLLKATALTSREIQNQIK
LDAKDVLLVLQELLENNHIVILANNKYTLKS
NT seq
1896 nt
NT seq
+upstream
nt +downstream
nt
atgctggacgcgcaggaaattcttttaaaatactggaaacactccagttttagaccgtta
caaaaagaaattatcgattcggttttagaaggtcaggacacttttgcactgctgccaacc
ggaggcggaaaatcaatttgttttcaggttccggctatgatgcgtgaaggaatctgtctg
gtaatttcacctttgatcgctttaatgaaagatcaggtggcgaatctgcaaaaaagagat
attaaagcgattgcacttacaggcggcattcatacagaagaaattattgatctgctggat
aactgccaattcggaaattataaattcctttatctttctccggaacgtttacaatcggac
tggattttagaaagaatcaaaaatcttcctataaatttaattgccattgatgaagcacat
tgtgtttcgcaatgggggcatgattttagacctgcttatttaaaaatttctgaacttaaa
aaatacttccctaaaattccgtttttagctttgaccgcaacagcgactcctagagttgtt
gaagacatcaaaaccgaactcggattaaaagacaccaaactttttcaacagtcttttgaa
agaaagaatattgcatacatggtttttgaagttgaagacaaattatatcgtgtcgagcag
attttaaagaaaaatccacagccgtctattatatatgtacgaaacagaaaatcatgcctt
aatatgtcaactcaattacaatcgttaggatttagagcaacgtattatcacggcggactt
tcggctcaggaaaaagataaaaacatgcagttgtggatgtcggagcaggcacaagttatt
gtagccaccaatgcgtttggaatgggaatcgacaaagacaatgtaaaaacggttattcat
actcaattacctgaaaatttagaaaactactatcaggaatctggacgagcgggacgaaat
ggagaaaaggctttctcggttttattattcaataattctgatgcaactcaaacagaacaa
cagtttataaatgttttgccagacaagaagttcttaaaaaccatatttattaaactttgt
aattattttcaaatcgcttatggtgaaggtttagatgattcgtattcgtttaaaatgaat
catttttgcaataaatatgacttccctactttaaaaacttataatgcactgcagttttta
aatcagcaaggcattattaccatgtctcaggaattttcagaaaaggttacaatgcagttt
ttaatagaatccaaggaagtgattcgatacatgagcctgaacccgaatgacgaagaaatt
attctggcaattttaagaacttacccagggattcatgaaatgaaaacaccgcttaatctc
tcacttattgccaaaaaatcaaatcattctgaagaacaagttacagcacttttagaaaaa
ttaaaagagaaagagatcattgagtataaatctaaaaataacgacgcgactattttattt
aatgaagtccgcgaagatgatttgacgataaacagggtttctaaatatctggaaaaacaa
aataaactgaaacgcgaccagctttcgtctgtactatattatataaaagaagacaaaact
tgtaaaaaccgactggttttggattattttggagaagaaaccaaagtcaattgcggtgtt
tgttcttactgcattactcaaaaaggaaaaatcacagaagctgattctattgccgataaa
attcttcacttattaaaagcaactgccttaacttcgcgcgaaattcaaaatcaaattaaa
ttagacgcaaaagatgttcttttggtattgcaggaattattagaaaacaatcatatcgta
atattagcgaacaataaatacactttaaaatcataa
DBGET
integrated database retrieval system
