Flavobacterium johnsoniae UW101: Fjoh_0371
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Entry
Fjoh_0371 CDS
T00508
Name
(GenBank) DNA-directed RNA polymerase, alpha subunit
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
fjo
Flavobacterium johnsoniae UW101
Pathway
fjo03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
fjo00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Fjoh_0371
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
fjo03021
]
Fjoh_0371
03400 DNA repair and recombination proteins [BR:
fjo03400
]
Fjoh_0371
Enzymes [BR:
fjo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Fjoh_0371
Transcription machinery [BR:
fjo03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Fjoh_0371
DNA repair and recombination proteins [BR:
fjo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Fjoh_0371
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_L
RNA_pol_A_CTD
RNA_pol_L_2
Motif
Other DBs
NCBI-ProteinID:
ABQ03407
UniProt:
A5FN15
LinkDB
All DBs
Position
complement(394413..395405)
Genome browser
AA seq
330 aa
AA seq
DB search
MAIFNFQKPDKVIMIDSTDFEGKFEFRPLEPGYGLTVGNALRRVLLSALEGYAITSVRIE
GVDHEFSTISGVVEDVTEIILNLKQVRFKRQIEDIDNESVTISVSGKDQLTAGDFQKFIS
GFQVLNPDLVICNLDSKIKLNFDLTIEKGRGYVPAEENKKQNAAIGTIFTDSIFTPVKNV
KYAIENFRVEQKTDYEKLVFEIKTDGSINPKDALTEAAKVLIHHFMLFSDERITLEADEI
AQTESYDEESLHMRQLLKTKLVDMDLSVRALNCLKAAEVDTLGDLVSFNKNDLMKFRNFG
KKSLTELDELVAVKNLTFGMDLAKYKLDKE
NT seq
993 nt
NT seq
+upstream
nt +downstream
nt
atggcaatatttaattttcaaaagcccgataaagttatcatgatcgattcaaccgatttt
gaaggtaaatttgaatttagacctttagaacctggttacggattgacagttggtaatgca
cttagaagagttttgctttcagcgttagaaggttatgcaattacatctgttcgtatcgaa
ggtgtagatcatgagttttctactatttcaggtgttgttgaagatgttaccgaaattatc
cttaatctaaaacaagtacgttttaaacgtcagatcgaagatatcgataatgaatcagtt
actatttctgtttctggtaaagatcaattaacagcaggtgattttcaaaaatttatctca
ggttttcaagttttgaatccagaccttgttatctgtaatttagattctaaaatcaaattg
aacttcgatttaacaatcgaaaaaggtagaggatacgttcctgctgaagagaacaaaaaa
cagaatgctgcaattggaacgatttttacagattctatttttactccggtaaaaaatgta
aaatatgcaatcgaaaatttccgtgtagagcaaaaaacagattacgaaaaattagttttt
gaaatcaaaactgatggatctattaatccaaaagatgctcttactgaagctgctaaagtt
ttaattcaccatttcatgttgttttctgatgaaagaattacacttgaggctgacgaaatt
gcacaaacagaatcgtatgatgaagagtcattgcatatgagacaattgcttaaaactaag
cttgttgatatggatttatctgtaagagcattaaattgcttgaaagcggctgaagttgat
acacttggtgatttagtatcgttcaataaaaatgacctaatgaaattccgtaatttcggt
aaaaaatctttaactgaacttgatgaacttgttgcagtgaagaatttaacttttggaatg
gatttagctaaatacaaactagataaagaataa
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