Flavobacterium johnsoniae UW101: Fjoh_1017
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Entry
Fjoh_1017 CDS
T00508
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
fjo
Flavobacterium johnsoniae UW101
Pathway
fjo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fjo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Fjoh_1017
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fjo03019
]
Fjoh_1017
03016 Transfer RNA biogenesis [BR:
fjo03016
]
Fjoh_1017
Enzymes [BR:
fjo01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
Fjoh_1017
Messenger RNA biogenesis [BR:
fjo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Fjoh_1017
Transfer RNA biogenesis [BR:
fjo03016
]
Prokaryotic type
tRNA degradation factors
Fjoh_1017
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
OB_Dis3
S1
OB_RNR_1st
OB_HELZ2
TBPIP
DUF5604
DUF7430
Motif
Other DBs
NCBI-ProteinID:
ABQ04050
UniProt:
A5FL71
LinkDB
All DBs
Position
complement(1159913..1162093)
Genome browser
AA seq
726 aa
AA seq
DB search
MSKKIRKPIKKEKDFSGKILKILSQNANKPFNYRQIGAKLELDDTKSRNQIIKDLKILAA
QKKIIETEPGKYLVKAVSQDYYEGTIDMTSRKTAYFICDEFEEDVFIPTNNLNRALDKDK
VKVYVYNRRKGKRPEGEVIEVIERDKTEFVGVIDIQPNFAFVSTANPKMYTDIFIPKDKL
GEAENGDVVLVKIEDWPKRADSPFGSVIRVLGKPGEHNTEIHAILAEYGLPSDFPVEVEV
YAQKLDTSIQESEIAKRRDMRDTLTFTIDPKDAKDFDDALSFKKLENGNFEIGIHIADVS
YYLEEGTILDDEAYQRATSVYLVDRVVPMLPEVLSNFACSLRPNEEKYTFSAIFEVSPTA
QVINQWFGRTVIYSDQRFAYEEAQYIIETKDNTIPVDVSITGESYVVSDEIREATLKLDE
LAKILRKKRMQQGAISFDKVEVKFNLDAEGEPEGVYFKISKDANHLIEEFMLLANRKVAE
YIGKQKKTFVYRIHDEPNEDKLIAMQTVIAKFGYKIDFRNKGDIAKSLNSLMEEVNGKKE
QNLIDTLAIRSMSKAKYSTDNIGHYGLAFDYYSHFTSPIRRYPDVMVHRLLQYYLDGGAS
VDEETYETKCLHCSNMESLATNAERDSIKYMQVKYMQDHQDEEFLGVISGVTEWGIYVEI
VSNKCEGMVRIREIKDDYYTFDERQYALVGATSNSILQLGDEIYVKVKNADLVKKQLDFH
FLRRAE
NT seq
2181 nt
NT seq
+upstream
nt +downstream
nt
atgagtaagaaaattagaaagccgataaaaaaagagaaagatttctctgggaagatcctt
aaaattttatcgcagaatgccaataagccatttaattacagacagataggagcgaagtta
gaacttgacgatacaaaaagcagaaaccagattatcaaagacttaaagattctggctgca
caaaagaaaattatagaaacagaacctggaaaatatttagttaaagctgttagtcaggat
tactacgaaggaacgatagatatgacgagcagaaaaacggcatattttatttgtgatgaa
tttgaagaagatgtttttattccgaccaataatttgaatcgtgctttagacaaagacaaa
gtaaaagtttacgtttataaccgaagaaaaggaaaaagacctgaaggtgaagtaattgaa
gtaattgaaagagataaaacagagtttgttggtgtaattgacattcagccaaactttgct
tttgtttctactgccaatccaaaaatgtacaccgatatttttattccaaaagataaattg
ggagaagcagaaaacggtgatgttgttttagttaagattgaagactggcctaaaagagct
gatagtccgtttggatctgtaattcgtgttttaggaaaacctggagaacacaatacagaa
attcatgctattctggctgaatatggactgccatctgatttcccggtagaagtagaggta
tatgctcaaaagctggatacctcaattcaggaatcagagattgcaaaacgtcgtgatatg
cgtgatacacttacgtttacgatagatccaaaagatgcaaaggattttgatgatgccttg
tctttcaaaaagttagagaatggaaactttgaaattggaatccatattgccgatgtttcg
tattatttagaagaaggaaccattcttgatgatgaagcgtaccaaagagcaacttcagtt
tatttggtagatagagtagtgccaatgcttccggaagtattgtctaactttgcctgttca
cttcgtccgaatgaagaaaaatatacattctctgctatatttgaagtttcgccaactgca
caagttatcaaccaatggtttggaagaacggtaatttattcagatcagcgttttgcttac
gaagaagcacaatatatcattgaaacaaaagataatacaattccggttgatgtttctatt
accggagaatcgtatgtggtttcagatgaaattagagaagcaactttgaaattagatgaa
ttagcgaagattttaagaaagaaaagaatgcagcaaggtgctatttcttttgataaagtt
gaagttaaatttaatcttgatgcagaaggagaaccagaaggagtttacttcaaaatctca
aaagatgccaatcatttgattgaagaatttatgcttttggcaaatagaaaagtagctgaa
tacattggtaaacaaaagaaaacctttgtttatcgtattcacgacgaaccaaacgaagat
aagttaattgcaatgcaaactgtaattgctaaatttggttataaaattgattttagaaat
aaaggtgatattgccaaatcattgaattctttaatggaagaagtaaatggtaaaaaagag
caaaacttaattgatactcttgcaattagaagtatgagcaaagccaaatattcaacagat
aatattggtcattatggtttagcttttgattattacagccattttacatcgccaatccgt
cgttatcctgacgttatggtacacagattgctgcaatattatctggatggaggagcttct
gtagatgaagaaacctacgaaacaaaatgtctgcattgttcgaacatggaaagtttagcg
actaatgctgaacgtgatagtatcaaatacatgcaggttaaatacatgcaggatcatcag
gacgaagaattccttggtgttatttctggtgttaccgaatggggaatttatgttgaaatc
gtttctaataaatgcgaaggaatggtaagaatcagagaaataaaagatgattactatacc
ttcgatgaaagacaatatgctttggttggtgctacttcaaacagcattttgcaattaggg
gatgaaatttatgttaaagtaaaaaatgccgacttagtgaaaaaacaactggattttcat
tttttaagacgagcagaataa
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