Flavobacterium johnsoniae UW101: Fjoh_1310
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Entry
Fjoh_1310 CDS
T00508
Name
(GenBank) DNA polymerase III, alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
fjo
Flavobacterium johnsoniae UW101
Pathway
fjo03030
DNA replication
fjo03430
Mismatch repair
fjo03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
fjo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Fjoh_1310
03430 Mismatch repair
Fjoh_1310
03440 Homologous recombination
Fjoh_1310
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
fjo03032
]
Fjoh_1310
03400 DNA repair and recombination proteins [BR:
fjo03400
]
Fjoh_1310
Enzymes [BR:
fjo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
Fjoh_1310
DNA replication proteins [BR:
fjo03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
Fjoh_1310
DNA repair and recombination proteins [BR:
fjo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
Fjoh_1310
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
RNase_T
Intimin_C
SRP14
Motif
Other DBs
NCBI-ProteinID:
ABQ04342
UniProt:
A5FKC9
LinkDB
All DBs
Position
1494634..1499166
Genome browser
AA seq
1510 aa
AA seq
DB search
MYLIFDTETTGLPKRWDAPITDSDNWPRCIQIAWQLHDEMGQLIEHQDYLVKPEGFNIPY
DAERIHGISTELAEADGITLAEVLEKFNIALSKTKFIVGQNLGFDVNIMGAEFHRMGVES
QMASMPVLDTCTEVTASLLQLPGGRGGKFKLPTLTELHSYLFDQPFAEAHNATADVEATT
RCFLELVRREVFTKEELDVPKEYFKEFQERNAEPFKLIGLKHINLKAASDKIREQLKALA
GEGQQTVVSEEDKADFKAAKFAHLHNHTQFSVLQSTIGIGNIVAATAKNGMPAVAMTDTG
NMMGAFHFVSAVMNHNKAASGKNKALVEAGEEPTETEIKPIVGCEFNICENHLDKSKKDN
GYQVVLLAKNKAGYHNLAKMASIAYTEGFYYVPRIDKNIVEKYKGDIMVLSGNLYGEIPS
KILNIGENQAEEALIWWKEQFGEDFYLEVMRHNQEDENRVNKTLIEFSQKHNVKLIATNN
TYYLNKEDANAHDILLCVKDGEKQATPIGRGRGYRYGLPNQEYYFKSEAEMKKLFADLPE
AIINIQEVIDKVEGYSLYRDVLLPKFEIPDEFMVPEDEEDGGVRGENKYLRHLTMEGAKR
RYGEITESIQERLDFELMTISNSGYPGYFLIVQDFIAEARKMDVSVGPGRGSAAGSAVAY
CLGITNIDPIKYDLLFERFLNPDRVSMPDIDIDFDDEGRGRVMDYVINKYGQKQVAQIIT
YGKMATKSAIRDTARVLDLPLFEADRIAKLIPGMMPSKWNLARFISESEEEVKKALRSDE
FDNVKELIAIANEDDLAGETIQQAKILEGSMRNTGIHACGVIITPSDITNYVPVTTAKDS
DLYVTQFDNSVAESAGLLKMDFLGLKTLTLIKDTVKLVKYRTGIDLDPDNFPIDDEETYA
LFQRGETVGIFQYESPGMQKYMKDLKPTVFGDLIAMNALYRPGPLEYIPSFVRRKNGDEE
IKYDLDACAEYLSETYGITVYQEQVMLLSQSLAGFTKGEADVLRKAMGKKQKDVLDKMKP
KFVEQAAQKGHDAKILEKIWKDWEAFASYAFNKSHSTCYAWIAYQTAYLKAHYPAEYMAA
VLSNNMNDIKQVSFFMEECKRMGLQVLGPDVNESYYKFTVNDDYAVRFGMGAIKGVGSGA
VETIVENRKDGRYKSIFDLAKRIDLRAANKKAIENLALAGGFDSFEGTTRAQYFHDDGDG
ITFYEKAMRYGSKFQENENSSQVSLFGEASEVQIAEPVVPPCEDWSTMEKLAKEKEVVGI
YISGHPLDDFRFEMKYFCNARLEALKSMNEYVGKNLNFAGIINNVQHRVAKNGKGWAAFN
LEGYDESYEFKIFGEEYLKFRHFLIQNNFAFLKILIKDGWVNHDTGKKTDPRMQFVEIRQ
LQDILEAFAKKLIVLLNIKDLHPEFIHKLSHLFNENKGDNSVTFEIMELEKIKKLVEVET
PTDFEDADDAVFDDENEDAAIEDTKIQEVNEVEEIKVVTKLTMPSRRLKVRISTELLQEL
EKMQINFKLN
NT seq
4533 nt
NT seq
+upstream
nt +downstream
nt
atgtatttaatattcgataccgaaacaaccggattaccaaaacgctgggatgccccgata
accgattctgataactggcctcgctgtatacaaattgcgtggcagcttcatgacgaaatg
ggacagcttattgagcatcaggattatttggtaaaaccagaaggatttaatattccgtat
gatgccgagcgtattcacggaatctcaactgaattggctgaagccgatggaatcactttg
gccgaagttctggagaaattcaatattgctttaagcaaaactaaatttatcgttggacaa
aatttaggtttcgacgttaatattatgggagctgaattccatagaatgggagtggagtct
caaatggcttcaatgcctgttttggatacttgtaccgaagttacggcttcgttattacag
cttcctggaggtcgtggaggaaaattcaaattgccgactctgaccgaattacacagctat
cttttcgatcagcctttcgcggaagcgcacaatgcaactgccgacgttgaggcaactacg
cgttgtttcttggaattggttagaagagaggtttttacaaaagaagaattagacgttccg
aaggaatatttcaaagaatttcaagaaagaaatgctgagccatttaagttaattggttta
aaacacattaatttaaaagctgcttcagataaaatcagggaacagcttaaagctttagct
ggagaagggcagcagaccgttgtttcagaagaagataaagctgatttcaaagcagcaaaa
tttgcgcatttacacaatcatacgcagttttcggtacttcaatctactatcggaattgga
aatattgtagcagcaacagctaaaaacggaatgcctgccgtagcgatgactgatactgga
aacatgatgggagctttccattttgtgagtgccgtaatgaatcataacaaagcagcatct
ggaaaaaacaaagctttggttgaagcaggagaagaaccaacagaaaccgaaataaaacca
attgtaggctgtgaatttaatatctgcgaaaatcatttagataaaagtaaaaaagacaac
ggttatcaggttgtattactggccaaaaacaaagcgggttaccacaacttagctaaaatg
gcttcgattgcttatactgaaggattttattatgtaccgagaatcgacaaaaacatcgtc
gaaaaatacaaaggcgatattatggttttgtctgggaatttatacggagaaattccgagt
aaaatcctaaacatcggtgaaaaccaagccgaagaagcattgatttggtggaaagaacaa
tttggcgaagacttctatctggaagttatgcgtcataatcaggaagatgaaaatcgtgtc
aacaaaaccctgattgaattttcgcaaaaacacaatgtcaaattaattgcgacaaacaat
acgtattacttaaataaagaagatgcaaatgcgcatgatattttactttgtgtaaaagac
ggtgaaaagcaggcaacacctattggacgtggacgcggttaccgctacggacttccaaat
caggaatattatttcaagtcggaagcagagatgaaaaagctcttcgccgatttacccgaa
gccattatcaatattcaggaagttattgataaggttgaagggtattcactttatcgtgat
gtattgcttcctaaattcgaaatccctgacgaatttatggttcctgaagatgaagaagat
ggtggtgtaagaggggaaaataaatacttgcgacaccttacgatggaaggtgcgaaaaga
agatacggcgaaattaccgaatcaattcaggagcgtttggattttgaattaatgacgatt
tcgaattcaggatatccgggttatttcctaattgtacaggatttcatcgccgaggcaaga
aaaatggacgtatcggtaggtcctgggcgtggatctgcagcgggttctgccgttgcttac
tgtctggggattacaaatattgaccctattaagtacgatttgctttttgagcgtttccta
aatcctgaccgtgtatcgatgcccgatattgatatcgactttgatgacgagggtcgtgga
cgtgtaatggattatgtaatcaacaaatacggtcaaaaacaggtagcacagattatcact
tatggtaaaatggcgactaaatcggcgattcgtgatacggcgcgtgtattggatttacct
ttatttgaagccgatagaattgcgaaactgattccgggaatgatgccgtcaaaatggaat
ttagcgcgttttatttcggagagtgaagaggaagttaaaaaagcgcttcgttctgacgaa
tttgataatgtaaaagaattaatcgcgattgccaatgaagatgatttagcaggagaaacc
attcagcaggcaaaaattctggaaggatcgatgcgtaacacgggaattcacgcgtgcggg
gtaatcattacaccgtcggatattacgaattacgtacctgtaacaactgcaaaagattca
gatttatatgtaacacagttcgataactcggttgcagaaagtgccggattgcttaaaatg
gacttcttgggtctgaagacccttacgctgataaaagataccgtaaaactggtaaaatac
agaacaggaattgatctcgatccagataatttcccgattgatgatgaagaaacgtatgcg
cttttccaaagaggtgaaactgttggaatcttccaatatgagtcacccgggatgcagaaa
tacatgaaagatctgaagccgacggtttttggagatttaattgccatgaacgccttgtat
cgtccgggacctttggagtatattccatctttcgttcgaagaaaaaacggtgatgaagaa
atcaaatacgatttagatgcctgtgccgaatatttatcagaaacgtacggaattacagtt
taccaagagcaggtaatgcttttgtctcagtctttggcaggatttacaaagggtgaggcc
gacgtcttgcgtaaagcgatgggtaaaaagcaaaaagacgtactggataaaatgaagccc
aagtttgttgaacaagcagcacaaaaaggacatgacgccaagattttggagaaaatctgg
aaagactgggaagcctttgcgagttacgccttcaacaaatcgcactcgacttgttatgcc
tggattgcgtaccaaactgcttatttgaaagcgcattaccctgctgaatatatggcggcg
gtactttcgaataacatgaacgatatcaaacaagtttctttcttcatggaagaatgtaaa
cgtatgggattacaggttcttgggcctgacgtaaacgaatcgtactataaatttactgta
aacgatgactacgcagttcgtttcggaatgggagctatcaaaggtgtgggttccggagct
gtagaaacaattgtagaaaacagaaaagacggaagatataaatcgatttttgatttggcg
aaacgaattgatttgcgtgccgccaataaaaaagcgattgaaaacttagcgcttgccgga
ggtttcgattcatttgaaggaacaaccagagcgcagtatttccacgacgatggtgacgga
attacattctacgaaaaagcgatgcgttatggatcgaagtttcaggaaaatgaaaactca
tcccaagtaagtttatttggagaagccagcgaagtacaaatcgcagaaccagttgtgcct
ccatgtgaagactggagtacgatggaaaaactggcaaaagaaaaagaggttgttggaatt
tatatttctggacatccgctggatgattttagatttgagatgaaatacttctgtaatgct
cgtttagaagcattaaaaagcatgaatgaatatgtaggtaaaaatctaaattttgccgga
attatcaacaacgtacagcatcgtgtggctaagaatggaaaaggctgggccgctttcaac
ttagaaggatatgatgaaagttatgagtttaagatttttggtgaagaatacctgaaattc
cgccatttcttaattcagaacaattttgcctttttgaaaatattaatcaaagacggctgg
gtaaatcatgacaccggtaaaaaaacagatccgagaatgcagtttgttgagattcgacaa
ttgcaggacattttagaagcttttgctaaaaagctgattgttttattgaatattaaagat
cttcatccggagttcattcataaactgagtcatttgtttaatgaaaacaaaggagataat
tctgtgacttttgaaatcatggaattagaaaaaataaaaaaactggttgaggtagagact
ccaactgattttgaagatgctgatgatgcggtttttgatgatgaaaatgaagatgccgca
attgaggataccaaaatacaagaagtaaatgaggtagaagaaataaaagtagttaccaag
cttacgatgccaagcagaagattgaaagtaagaatttccaccgagctgctgcaggaattg
gaaaaaatgcagataaattttaagttgaactaa
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integrated database retrieval system
