Flavobacterium johnsoniae UW101: Fjoh_2402
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Entry
Fjoh_2402 CDS
T00508
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
fjo
Flavobacterium johnsoniae UW101
Pathway
fjo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fjo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Fjoh_2402
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fjo03019
]
Fjoh_2402
03009 Ribosome biogenesis [BR:
fjo03009
]
Fjoh_2402
Enzymes [BR:
fjo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Fjoh_2402
Messenger RNA biogenesis [BR:
fjo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Fjoh_2402
Ribosome biogenesis [BR:
fjo03009
]
Prokaryotic type
rRNA helicases
Fjoh_2402
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ABQ05429
UniProt:
A5FH88
LinkDB
All DBs
Position
complement(2875443..2877347)
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AA seq
634 aa
AA seq
DB search
MNKFEQLGLNESLLKAILDLGFENPSEVQEKAIPLLLEKDTDMVALAQTGTGKTAAFGFP
LIQKIDADNRNTQALVLSPTRELCLQITNELKNYSKYEKGINVVAVYGGASITEQAREIK
RGAQIIVATPGRMQDMINRGLVNIKNIDYCILDEADEMLNMGFYEDIVSILSDTPDQKNT
WLFSATMPQEVARIAKQFMSEPVEITVGAKNSGSATVSHEFYLVNARDRYEALKRLADAN
PDIFSVVFCRTKRDTQAVAEKLIEDGYSAAALHGDLSQAQRDGVMKSFRGRQIQMLVATD
VAARGIDVDNVTHVVNYQLPDEIETYNHRSGRTGRAGKLGTSIVIVTKSELRKISSIERI
IKQKFEEKAIPSGIEICEIQLLHLANKIKDTEVDHEIDNYLPAINNVLEDLSKEELIKKM
VSVEFNRFITYYKKNRDISTQSSGERRERGDSEPREFNNNGAVRYFVNIGSRDNFDWMSL
KDYLKETLDLGRDDVFKVDVKEGFSFFNTDPEHTDKVMDILNNVQLEGRRINVEISKNDG
GGRRDHNNRGGGRNSGGQRREGNFAPRREGSGGGFRSDRNSAPRREGSGGGFRSDRNSAP
REGGFRRNEGGSDRAPRRSESFGDSSRPRRPRRD
NT seq
1905 nt
NT seq
+upstream
nt +downstream
nt
atgaataaatttgaacaattaggattgaatgaatcgttactgaaggcgattttagatcta
ggatttgaaaatccgtcagaggtacaggaaaaggcgattcccctattattggaaaaagac
acagatatggttgcgttggctcagacagggacagggaaaacggcagctttcggttttccg
ctaattcaaaaaattgatgctgacaatagaaacacacaagcattagttttatcgccaaca
cgagaactttgtttacagattaccaacgaacttaaaaactactcaaaatacgaaaaaggt
attaatgtggtagcagtttacggcggggctagtattacagagcaagctagagagattaaa
agaggcgcacaaattattgtggctactccaggaagaatgcaagacatgattaacagaggt
ttagttaacattaaaaatatagattactgtattcttgatgaagctgatgagatgttgaac
atgggattctatgaagacatcgtatctattttatcagatactccagatcaaaaaaacaca
tggttgttctctgcaactatgccgcaagaggttgccagaattgcaaaacaattcatgagc
gaaccggttgaaattactgttggtgctaagaactcaggttctgcaacagtttctcacgaa
ttttacttagtaaatgctcgtgatcgttacgaagctctaaaacgtttagcagatgctaac
ccggatattttctctgtagttttctgtcgtactaaaagagatacacaggctgtagctgaa
aaattaattgaagatggatatagcgccgctgcgttacacggagatttatctcaggcacaa
cgtgacggggtaatgaaatcgttccgtggaagacaaattcagatgcttgttgctactgac
gttgctgcacgtggtattgacgttgataacgtaactcacgttgtaaactaccaattacca
gatgagattgaaacttacaaccaccgttctggacgtacaggtagagctggaaaattagga
acttctattgtaatcgttacaaaaagtgagttacgtaaaatttcttctatcgagagaatc
attaaacaaaaattcgaagaaaaagctattccatctggaattgaaatctgcgaaattcag
ttattacacttagcaaacaaaattaaagatactgaggttgatcacgaaattgacaactat
ttaccagcaattaacaatgttcttgaagatttatctaaagaagaattgattaagaaaatg
gtatctgtagaatttaaccgtttcattacttactacaaaaagaatagagatatctctact
caatcttctggagaaagacgtgaaagaggtgattctgagccaagagaattcaacaacaac
ggagctgttcgttattttgtaaacattggttctagagacaattttgactggatgtcttta
aaagattacttgaaagaaacattagacttaggtcgtgatgacgttttcaaagtagatgta
aaagaaggtttctctttctttaacactgatcctgagcacactgataaagtaatggatatt
ttaaacaacgttcaattagaaggacgtcgtattaatgttgaaatttctaaaaatgacgga
ggcggaagacgtgaccacaacaatcgtggcggcggaagaaattctggcggacaaagaaga
gaaggaaacttcgctccaagacgtgaaggttctggcggaggttttagaagcgacagaaat
tctgctccaagacgtgaaggttctggaggcggatttagaagcgacagaaactctgctcca
agagaaggaggttttagaagaaacgaaggtggttctgacagagctccaagacgttctgaa
agttttggtgattcatcaagaccaagaagaccaagaagagattaa
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