Flavobacterium johnsoniae UW101: Fjoh_2452
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Entry
Fjoh_2452 CDS
T00508
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
fjo
Flavobacterium johnsoniae UW101
Pathway
fjo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fjo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Fjoh_2452
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fjo03019
]
Fjoh_2452
Enzymes [BR:
fjo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Fjoh_2452
Messenger RNA biogenesis [BR:
fjo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Fjoh_2452
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
UTP25_NTPase-like
PhoH
Motif
Other DBs
NCBI-ProteinID:
ABQ05479
UniProt:
A5FH33
LinkDB
All DBs
Position
complement(2936585..2937937)
Genome browser
AA seq
450 aa
AA seq
DB search
MSTFEKFNLPKSLQKAVDELGFVTPTPIQEKSFSVIMSGRDMMGIAQTGTGKTFAYLLPL
LKLYKFTHTNTPKIVVLVPTRELVVQVVEEVEKLTKYMSVKTLGIYGGVNINTQKKAVYE
GVDILVGTPGRTMDLALDAVVRFDETQKLVIDEFDEMLNLGFRPQLTSLFAMMKTKRQNI
LFSATMTDEVDDILNDYFDFPEEVTLAPSGTPLEKITQFTYNVPNFNTKVNLLKHLLETD
ESMNRILVFVNNKKISDMLFNRIDELFEGQFGVIHSNKSQNYRLSTMAEFQEGNLRGLIT
TDVMARGLDISNITHVINFELPEEPELYMHRIGRTGRADATGTAISFVTPREEEFKIETE
LLMDQELKISDFPEEVEISEKLIEAEKDKLPRKFLLKKPKLEGDGAFHEKSKKNQKINLG
GPSKTKKKTHGSVNRNMLKTRNEKKKKNNK
NT seq
1353 nt
NT seq
+upstream
nt +downstream
nt
atgagcactttcgaaaaattcaatctcccaaaatcattacaaaaagcagttgacgaatta
gggtttgttacgcctactcctattcaggaaaaatctttttctgtaatcatgtctggacgc
gatatgatgggaattgcacaaaccggaaccggtaaaacttttgcttatttactgcctctt
ttaaaactatataagtttacccataccaatacgccaaaaatcgtagtgcttgtaccaacc
cgcgaattagtagttcaggtggttgaagaagtagaaaagctgaccaaatacatgtcagtt
aaaactttaggtatttatggcggcgtaaacatcaatacacaaaaaaaagccgtttacgaa
ggtgtcgacattttggttggaacaccaggacgtacaatggatttagcgcttgatgctgtc
gttcgttttgacgaaactcaaaaattagttatagacgagtttgacgaaatgttgaattta
ggtttcagaccacagctgacttcactttttgcgatgatgaaaaccaaacgtcaaaacatt
ctgttctcggcaacgatgacagatgaagttgatgatatcttaaatgattattttgatttc
ccggaagaagtaacattagcaccatctggaacaccgcttgaaaaaattacacagtttact
tataatgttccaaacttcaatacaaaagtaaatttgctgaaacatttattagaaaccgac
gaaagcatgaatcgtattttggttttcgtaaacaacaaaaagatttcggatatgcttttc
aatcgtattgatgagctttttgaaggtcagtttggtgttatccactctaataaatctcaa
aattaccgtttgagcacaatggctgaatttcaggaaggaaaccttcgcggtttaattaca
accgacgttatggcgagaggtttggatatttcgaatatcactcacgtaattaacttcgaa
cttccggaagaaccagaattgtatatgcacagaattggtcgtacaggtcgtgcagatgca
actggaacagctattagttttgttacaccaagagaagaagaattcaaaattgaaactgaa
cttttaatggatcaggaacttaaaatttctgattttcctgaagaagtagaaatttctgaa
aaattgattgaagctgaaaaagataaactgccaagaaagtttttattgaaaaaaccaaaa
cttgaaggtgacggtgcttttcacgaaaaatctaagaagaatcaaaaaattaatctgggc
ggtccttcaaaaaccaaaaagaaaacacacggatcagttaatagaaatatgctgaaaacg
agaaatgagaagaagaaaaaaaataataagtaa
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