Flavobacterium johnsoniae UW101: Fjoh_2808
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Entry
Fjoh_2808 CDS
T00508
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
fjo
Flavobacterium johnsoniae UW101
Pathway
fjo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fjo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Fjoh_2808
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fjo03019
]
Fjoh_2808
03400 DNA repair and recombination proteins [BR:
fjo03400
]
Fjoh_2808
Enzymes [BR:
fjo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Fjoh_2808
Messenger RNA biogenesis [BR:
fjo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Fjoh_2808
DNA repair and recombination proteins [BR:
fjo03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Fjoh_2808
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RQC
HTH_40
HRDC
RecQ_Zn_bind
ResIII
GerE
HTH_11
Helicase_Sgs1
DUF2802
zf-CXXC
Sigma70_r4_2
DUF1149
MarR_2
Cys_rich_CPXG
Motif
Other DBs
NCBI-ProteinID:
ABQ05830
UniProt:
A5FG33
LinkDB
All DBs
Position
complement(3341092..3343209)
Genome browser
AA seq
705 aa
AA seq
DB search
MNSELLHAKLKENFGFEKFRPNQETIITTVLSGNDALAIMPTGGGKSICFQLPALVLPGI
TIVISPLIALMKDQVDSLKSNGISACYINSSQSSEEQQYYIDNLKTNTFKLVYIAPESLS
YLDTIFSELTISLIAIDEAHCISSWGHDFRPAYTNLGYLKNRFPSTPVLALTATADKATR
VDITKQLNLKNPKTFVASFDRKNLSLEVRPALDRVKQIIDFVENKPNESGIIYCLSRKTT
EELAEKLAKNGIAAKAYHAGLDNTTRAKTQDEFINDDCQVVCATIAFGMGIDKSNVRWVI
HYNLPKNIEGYYQEIGRAGRDGLPAETVLFESYADVIQLQKFASDGLNADVQLAKLDRMK
QYADAVSCRRKILLSYFGELVTENCGNCDICKNPPTFFDGTILAQKALSAITRLQESEPL
AVIVDFLRGSRNAYIYEKNYQELKTYGIGADISWYDWNQYLIQLINLGYCEIAFHQHNKI
LLTPFAKKVLFEGEKVKLTTVVKKVIDKNEIKQEKAKAVKNSLFETLRKLRYEIAKEEEV
PAYVIFSDASLRQMEILRPMSDEEFLAVEGVGKAKLEKYGAEFINAIIEFQRNKSVVKKE
KKDSTYKKTLELFQSGSSVEEIAERRSISQTTVVSHIAKLYVDGYDLDLSQFVSDEEIAA
IEKAQIELEKPSALKPYFDYFEEKMSYDKIRFGLAVVERKYQTIQ
NT seq
2118 nt
NT seq
+upstream
nt +downstream
nt
atgaattcagaactactacacgccaaactaaaggaaaattttggatttgaaaaattcaga
cccaatcaggagactatcattactacagtattgtctggtaatgatgcactggcaattatg
ccaaccggaggaggaaaatcaatatgttttcaattgccagcccttgtactgccaggaata
acgattgtaatttcacctctgatcgctttaatgaaagatcaggttgacagtttaaaatca
aatggtatttcagcttgttacatcaacagtagccaatcttcagaagaacagcagtattat
atagacaatttaaaaacgaatacttttaaacttgtttacattgcgcctgaaagtttatcg
tatttagacaccatttttagcgaattaactattagtttaatcgcaatcgacgaagcacat
tgtatttcatcctggggacacgatttcaggccggcttataccaatttgggttatttaaaa
aaccgcttcccttctactcctgttttggctttaacagcaactgccgataaagcgacacgt
gttgatattacaaaacagctcaatttaaaaaatccgaaaacttttgtagcttcttttgac
cgaaaaaatttaagtcttgaagtacgccctgcattagaccgtgtaaaacaaattattgac
tttgtagaaaataagccaaatgaatccggaataatctattgtttaagccgaaaaacaacc
gaagaacttgctgaaaaattagcaaaaaacggaattgcagcaaaagcctatcatgcaggc
ttagacaatacaacccgtgccaaaacacaagatgaatttataaacgacgattgtcaggtt
gtatgtgccacgattgcatttgggatgggaattgataaatcaaatgtacgatgggtaatt
cattataatcttcctaaaaacatagaagggtattatcaggaaattggccgtgcgggtcgt
gacggccttccggctgaaacggttttgtttgaaagttatgcagatgtaattcaacttcaa
aaatttgcttcggatggattgaatgcagatgtgcagcttgccaaattagaccgaatgaaa
caatatgccgatgctgtaagctgcagacgaaagattctgctttcttatttcggtgaattg
gtgacagagaattgcggtaattgtgatatttgcaaaaatccgccaacttttttcgatggg
acgattctcgcacaaaaagccctttctgcaattacaagattacaggagtctgagcctttg
gcagtaattgttgattttttaagaggctcgagaaacgcgtatatctacgaaaaaaattat
caggagctaaaaacgtacggaattggcgctgacatttcgtggtacgactggaatcaatat
ttaattcagcttattaatttaggatattgcgaaattgcctttcatcagcataataaaatt
ttattgacgccttttgctaaaaaagttttatttgaaggcgaaaaagtaaagcttacaaca
gttgtcaagaaagtaattgataaaaatgaaataaaacaagagaaagcaaaagctgttaaa
aattctctttttgaaacccttagaaaattacgttatgaaattgctaaagaagaagaagtt
ccggcatatgtaattttcagcgatgcatctttgagacaaatggaaatcttaagaccaatg
agcgatgaagaatttctggctgttgaaggtgttggaaaagcaaaacttgaaaaatacggt
gcagaatttatcaatgcaattattgagtttcaaagaaataaatcggttgttaaaaaagaa
aaaaaagacagcacttataaaaaaacgctagaattatttcaaagcggtagttctgtcgaa
gaaattgcagaaagaagaagcatcagccagacaactgtagtttctcatattgcaaaatta
tatgtagacggatacgatttagatttaagtcagtttgtttctgatgaagaaattgctgca
atagaaaaagcacaaattgaattagaaaagccaagtgcattaaagccttatttcgattat
tttgaagaaaaaatgtcttatgataaaattagatttggtttagcagttgttgaaagaaaa
tatcaaacaattcaataa
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