Flavobacterium johnsoniae UW101: Fjoh_2924
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Entry
Fjoh_2924 CDS
T00508
Name
(GenBank) UvrD/REP helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
fjo
Flavobacterium johnsoniae UW101
Pathway
fjo03420
Nucleotide excision repair
fjo03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
fjo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Fjoh_2924
03430 Mismatch repair
Fjoh_2924
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
fjo03400
]
Fjoh_2924
Enzymes [BR:
fjo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Fjoh_2924
DNA repair and recombination proteins [BR:
fjo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Fjoh_2924
MMR (mismatch excision repair)
Other MMR factors
Fjoh_2924
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PcrA_UvrD_tudor
Viral_helicase1
AAA_30
ResIII
nSTAND3
Motif
Other DBs
NCBI-ProteinID:
ABQ05945
UniProt:
A5FFS5
LinkDB
All DBs
Position
complement(3465224..3467560)
Genome browser
AA seq
778 aa
AA seq
DB search
MQKYIDQLNEAQRQPVLKKDGPMIIIAGAGSGKTRVLTIRIAYLMAQGVDAFNILSLTFT
NKAAREMKHRIADIVGASEAKNLWMGTFHSIFARILRSESDHLGYPSNFTIYDSQDSARL
ISSIIKEMQLDRDVYKPKQILGRISSYKNSLITVKAYFNNPELVEADAMAKRPRLGDIYQ
QYVERCFKAGAMDFDDLLLKTNELLTRFPEVLAKYQDRFRYILVDEYQDTNHSQYLIVRA
LSDRFQNICVVGDDAQSIYAFRGANINNILNFQKDYEGVVMFRLEQNYRSTRNIVEAANT
VMEHNKTKLDKVVWTANEFGPKIKVHRSLTDAEEGRFVASTIFEQKMQNQLHNGSFAILY
RTNAQSRAMEDALRKRDIPYRIYGGLSFYQRKEIKDVLCYLRLVINPKDEEALIRVINYP
ARGIGDTTVEKLTIAANHYKRSIWEVMVNIDKIDLKLTSGTKNKLKDFVTMIQSFQVIDQ
NQDAFYITDHVAKKTGLVQELKKDATPEGMAKIQNIEELLNGIKDFTEGQKEIDGARGAL
SEFMEDVALATDLDKDTTDEDRVALMTIHLAKGLEFPHVFVVGMEEDLFPSAMSMSTRSE
LEEERRLFYVALTRAEHQAYLTYAQSRYRWGKLTDSEPSRFIEEIDGQYLEYLTPAETNY
RYKSPIDGDIFGDIDKSKLRLAKPVGGTPPKHITDNNPKPDLNIRKLKPVSGNAPASSSA
NLFDNKLTIGNVVMHERFGKGEVINLEGVGADKKAEIKFEVGGIKKLLLRFAKLDVVG
NT seq
2337 nt
NT seq
+upstream
nt +downstream
nt
atgcagaaatatattgaccagctcaacgaagcgcagagacagcctgttctaaaaaaagac
gggccaatgattattattgctggtgcaggttcgggaaaaactcgtgttttaacgattaga
attgcttatttgatggcgcagggagttgacgcctttaatattttatcgctgacgtttact
aataaagcggcacgtgaaatgaagcacaggattgcagatattgtaggagcatctgaagca
aaaaatctttggatgggaacttttcactcgatttttgctcgtattcttcgctcagaatca
gatcatttggggtatccttctaattttactatttatgattctcaggattcggccagatta
atttcttctattattaaagaaatgcagctggatcgtgatgtttataaaccaaaacaaatt
ttaggacgtatatctagttataaaaacagtttgattactgtaaaagcatatttcaataat
ccggaattggttgaagccgatgcaatggcaaaacgaccaagattgggagatatttatcag
cagtatgtagagcgttgctttaaagctggtgcaatggattttgacgatttgctgctaaaa
accaacgaactattaactagatttccagaagttttagccaaatatcaggatcgtttccgt
tacattcttgttgatgagtaccaagatacaaatcactctcagtatttgattgttagagct
ttatcagacagatttcagaatatttgcgtggttggagatgatgcgcagagtatttatgct
ttccgtggcgcgaatattaataacatcttgaatttccaaaaggattatgaaggtgtagtt
atgtttcgtttagagcaaaattaccgttcaacccgaaatattgtagaagcggcaaatacg
gtaatggaacataataaaactaaacttgataaagtagtttggactgcgaatgaatttgga
ccaaaaattaaagtccacagaagtttgacagatgccgaagaaggccgttttgttgccagt
acgatctttgaacaaaaaatgcagaatcagcttcacaatggatcttttgctattttgtat
cgtacaaacgcacagtcgcgtgctatggaggatgctttaaggaaaagagatattccgtat
agaatttatggaggattgtcattttaccagcgtaaggaaattaaagatgttttgtgttat
ctgcgtttagtaattaatccaaaagatgaagaagcattgattcgagtaatcaattatcct
gctcgtggaattggagatacaacagttgaaaaacttactatcgcagcaaatcactacaaa
cgttcgatttgggaagtgatggtaaacattgataaaattgatttaaaactgacttcgggt
acaaaaaacaaactaaaagattttgttaccatgattcagagttttcaggttattgatcaa
aatcaggatgcattttatataacagatcatgttgccaagaaaaccggcttagttcaggaa
ttgaaaaaagatgctactccggaaggaatggcaaaaattcaaaatattgaagaactttta
aacggtattaaagattttacagaaggacaaaaagaaattgacggtgcaagaggagcttta
tctgaatttatggaagatgtggcacttgcgacggatttagataaagatacaacagatgaa
gatcgtgtagcgttaatgaccattcaccttgcaaaaggacttgagtttcctcatgttttt
gtagttggaatggaagaagatttgtttcctagtgctatgagtatgagtaccagaagtgaa
cttgaagaagaacgtcgtttgttttatgttgcattaacacgtgcagaacaccaagcgtat
ttgacttatgcccaatctcgttaccgctgggggaaattaacagacagcgaaccgtctcgt
tttattgaagaaatagatggacaatatttagaatatctaactccggctgaaacgaattac
agatataaatcgcctatcgatggagatatttttggagatattgataaatcaaagttaaga
ttagcaaaaccggtaggaggaactccgccaaaacatattacagataataatccaaaaccg
gatttaaatattcgtaaattaaaacctgtttcaggaaatgcgccagcaagttcaagtgct
aatttgtttgataataaattaactattgggaatgttgtaatgcatgaacgttttggaaaa
ggagaagtgattaatttagaaggtgttggagctgataaaaaagccgaaattaaatttgaa
gtaggaggtattaaaaaactcttgctgagatttgctaaattagatgtggttgggtag
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