Flavobacterium johnsoniae UW101: Fjoh_3773
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Entry
Fjoh_3773 CDS
T00508
Name
(GenBank) ATP-dependent DNA helicase, Rep family
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
fjo
Flavobacterium johnsoniae UW101
Pathway
fjo03420
Nucleotide excision repair
fjo03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
fjo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Fjoh_3773
03430 Mismatch repair
Fjoh_3773
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
fjo03400
]
Fjoh_3773
Enzymes [BR:
fjo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Fjoh_3773
DNA repair and recombination proteins [BR:
fjo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Fjoh_3773
MMR (mismatch excision repair)
Other MMR factors
Fjoh_3773
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_30
AAA_11
DEAD
Motif
Other DBs
NCBI-ProteinID:
ABQ06784
UniProt:
A5FDD0
LinkDB
All DBs
Position
4470831..4473194
Genome browser
AA seq
787 aa
AA seq
DB search
MNDPILENLNPSQLQAVKTTEGYVRVIAGAGSGKTKALTSRFAYIVDRLGINSSNILCVT
FTNKAAQEMKKRVKALIGDTYDLAFITTYHGFCVRFLREEINKIHFPKNFIILDAEDQKS
ILRDIFNELQINSKHLTFKQVLRFISKQKSTSNYLGYILENKGFEPDPSDSLSSRIFQIY
LDKLKRNYALDFDDLIHFTAFILDHNPDVLLKWQQNLHYIQVDEAQDSSENQFHLVEILS
RVHQNLFLVGDPDQTIYEWRGAKPEYLVEFDSMFPDTQTIIMNRNYRSTPNILKIGNHII
KNNTVRVDKDMITDKPEGFEVVHFHGKNDFEESQWIASEIKEILQAEQAAYSDITILYRS
NHLSRNIEQALIKDNIPYSIFGGIRFFERKEIKDVLSLLRLIVQGDNFSFLRMHNHPARG
LGKKFLERLSLLAGEQNLSLLQALERNITDKELAKKGAVEFLELIAELRETAKTKSISDL
VKIILDKSGLSELYRKDGDEDRLENIKELVNSMLLLEKENNAPVDIIEYLQEISLYTDLN
TDTENQDKVKLMTIHISKGLEFPYVFLCGFTEGVLPSALSVKERRARAIEEERRLMYVAV
TRAEKRFYMTDSEGFNFTTGLNKYPSRFLFEIKDEFYVRKGKLSQQIIENSRNHQSPGQL
QENTAFKEGDFVMHPVWNKGKIQTVDLEKKEYLVDFFDMGKVKPIDFGFKHLTGFSEDSG
DAEGPKELLDLAAHLKTAPDPFEQDTALKPQGITSLSSDSIFDSGPMPDLSENTKPDKKD
SKKWWKL
NT seq
2364 nt
NT seq
+upstream
nt +downstream
nt
atgaacgacccgattctagaaaatctcaatcccagccagctccaagcagtgaaaaccaca
gaaggatacgtgcgtgttattgccggtgcgggatctggaaaaacaaaagcccttacctcc
cgctttgcctacattgtggacagacttggcataaactcctccaatatactctgtgtaacc
tttaccaacaaggccgcccaggaaatgaaaaaacgcgtcaaggcactcatcggtgatacc
tatgatctggcttttattaccacttatcatggcttctgcgtaaggttcctccgtgaagaa
ataaacaaaatacattttccaaagaattttataatattggacgcggaagatcagaaaagc
atattgcgtgatattttcaacgaacttcagatcaactccaaacacctgactttcaaacag
gtgctgcgctttatatccaagcagaaaagcacttcaaattacctggggtatatacttgaa
aataaagggtttgaacctgacccaagtgattcattatccagccgtatctttcagatttac
ctggacaaactcaaacgcaattatgctttggattttgatgatctgatccattttactgct
tttattctggaccataatcccgatgtgcttttaaaatggcagcaaaacctgcattacatt
caggtggatgaggcgcaggacagctcagagaaccagtttcatctggtggaaatcctgtct
cgtgtacatcaaaacctgttccttgtcggggatcccgaccagaccatttatgaatggcgc
ggggcgaaaccggaatatcttgttgagtttgacagcatgttccccgatacccagaccatt
atcatgaaccgcaattaccgctctacgccgaacatcctcaagatcgggaatcacatcatc
aagaacaatacggtaagggtcgacaaagacatgatcaccgacaaacccgaaggctttgaa
gtggtgcattttcacggaaagaatgactttgaggaaagccagtggattgcttctgagatc
aaggaaatactgcaggctgaacaggccgcatattccgatatcaccatattataccgttcg
aatcacctttcaagaaatattgaacaggcccttatcaaagataatattccctactctatt
tttgggggcatccgtttctttgaaagaaaagagattaaagatgtgctctctcttttaagg
ctcattgttcagggagacaacttctcctttctgcgcatgcacaaccaccctgccagggga
cttggcaaaaagttcctcgaaagactcagtcttctggcaggggaacaaaacctttccctt
ttacaggcattggagcgcaacatcaccgacaaagaactggcaaaaaaaggcgctgttgaa
ttcctggaactgattgcagagctgcgtgaaacagccaaaacaaagtccatctcagatctg
gtcaaaattatactcgataaaagcgggctttctgaactataccgcaaagacggtgatgaa
gacaggcttgagaacattaaggaacttgtcaattcgatgctgctgctggaaaaagaaaac
aatgctccggtggacattattgagtatctccaggaaatatccctctacaccgatctgaat
actgataccgaaaatcaggacaaggttaaactgatgaccattcatatttcgaaaggactt
gagtttccctatgtcttcctgtgcggttttaccgaaggtgtactgcccagcgccctttct
gtcaaagaaagaagggcacgtgctattgaagaggaaagaaggctcatgtatgtggccgtt
acacgggcagaaaaacgattttacatgactgattccgaaggttttaattttaccacagga
ctcaataaatatccatcaaggttcctttttgagatcaaagacgaattttatgtccgcaaa
ggaaaactctcccagcagattatcgaaaacagccgcaatcatcaaagccctggacagctg
caggaaaatacagctttcaaagaaggggatttcgtaatgcatccggtctggaataaagga
aaaatacaaacggtcgacctggaaaaaaaagaatatctggtggatttttttgatatggga
aaagtaaaacccatcgattttgggttcaaacatctgacgggtttctccgaagacagcggg
gatgctgaagggccgaaagaacttttggatctggcagcgcatttgaaaacagcacctgac
ccttttgagcaggatactgctttgaaaccacagggcatcacgtcgttatcttctgacagt
atttttgattccggccctatgccggatctaagtgaaaatacgaagccagacaaaaaagat
tcaaaaaaatggtggaagctttaa
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