Flavobacterium johnsoniae UW101: Fjoh_4573
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Entry
Fjoh_4573 CDS
T00508
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
fjo
Flavobacterium johnsoniae UW101
Pathway
fjo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fjo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Fjoh_4573
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fjo03019
]
Fjoh_4573
Enzymes [BR:
fjo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Fjoh_4573
Messenger RNA biogenesis [BR:
fjo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Fjoh_4573
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
ERCC3_RAD25_C
Hydrolase
Motif
Other DBs
NCBI-ProteinID:
ABQ07572
UniProt:
A5FB52
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All DBs
Position
5530680..5531927
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AA seq
415 aa
AA seq
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MLFEDLSLSKSIQKAVFEEGYLNPTPIQEKSIPIVLAGRDLIGCAQTGTGKTAAFAIPII
HQLHRIVGSSKKAKQIRALIVTPTRELAVQIGQSFDTYSKYTNLTQLTIFGGVSQNPQVD
ALKNGVDVLVATPGRLLDLHKQGFLDLNHLHTLVLDEADQMLDMGFINDVKKIVKLTPKN
RQTLLFSATMPLAIRELAEMFLQDPEKVEVSPVSSTAENVEQRVYFVDKTEKRNLLYRLI
KEENLSNVLVFSRTKHGADNVVKALRKKNIPAEAIHGDKSQNARQRVLDAFKNKEVGVLV
ATDIAARGIDIEQLPYVINFDLPNIPETYVHRIGRTGRAGNGGIAISFCGKDEEPYWKDI
KKLIKVDVKIITDHPYPWHSGSPEAGEKPKNSNRSGGAHKSRKSSASKQNKKRWY
NT seq
1248 nt
NT seq
+upstream
nt +downstream
nt
atgttattcgaagatttatcactctcaaaaagtatacaaaaagccgtatttgaagaaggc
tatttaaatcccactcctattcaggaaaaatctattccgattgttttagccggaagggat
ttaattggctgcgcgcagacaggaacaggaaaaacagcggcatttgcgattccaattata
catcaattacaccgaattgtaggttcatcaaaaaaagccaaacaaattcgcgcacttatt
gtaacgcctacgcgtgaactagcggtacagattgggcagagttttgacacgtattctaaa
tataccaatttaacgcaattaactatttttggcggtgtttctcaaaaccctcaggttgat
gctttaaaaaatggtgttgatgttttggtggcaactccgggccgattattagatttacac
aaacaaggttttcttgatttaaatcatctgcataccttggttttagatgaagcagatcaa
atgctggatatgggttttataaacgatgtaaaaaagattgtaaaacttacgccaaaaaac
agacaaactttattattctctgcaacaatgcctcttgcaattcgcgaattggcagaaatg
ttcttgcaggatcctgaaaaagttgaagtttctccggtttcatcaactgcagaaaatgta
gaacagcgtgtttattttgttgacaaaacagaaaaaagaaacctgctttatcgtttaatt
aaggaagaaaatttatcaaacgtactggttttttcgagaaccaaacatggtgcagataat
gttgtaaaagcgcttcgcaaaaaaaatataccggcagaagccattcacggagacaaatcg
caaaatgcgagacagcgtgttctggatgcttttaaaaataaagaagtcggcgttctggtt
gctacagatattgcagcaagaggaatcgatattgaacagctgccttatgttatcaatttt
gatttaccaaacattcctgaaacttatgtacaccgaattggccgtacaggacgtgcagga
aacggcggtattgcaatatctttctgcggtaaagacgaagagccttactggaaggatatt
aagaaattaataaaagtagatgtaaaaattattacagatcatccttacccatggcattca
ggaagtcctgaagcaggagaaaaacctaaaaattcaaacagaagcggcggtgctcacaaa
tcgagaaaatcaagtgcttcaaaacaaaataaaaaacgctggtattaa
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