Flavobacterium johnsoniae UW101: Fjoh_4745
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Entry
Fjoh_4745 CDS
T00508
Name
(GenBank) protein of unknown function UPF0027
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
fjo
Flavobacterium johnsoniae UW101
Brite
KEGG Orthology (KO) [BR:
fjo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
fjo03016
]
Fjoh_4745
Enzymes [BR:
fjo01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
Fjoh_4745
Transfer RNA biogenesis [BR:
fjo03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
Fjoh_4745
Prokaryotic type
tRNA splicing ligases
Fjoh_4745
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
DUF993
Motif
Other DBs
NCBI-ProteinID:
ABQ07744
UniProt:
A5FAM4
LinkDB
All DBs
Position
complement(5734275..5735696)
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AA seq
473 aa
AA seq
DB search
MKTQINGTDILELGFPEGKIIGIALKINSKRNGFTRDEMIANFKNVLETPENYIDDKIFS
KLAVALIEKSNEKPEDFIALNQNPNAYSAYGLDHIEDGARKQMEVAMKLPVTVAGALMPD
AHQGYGLPIGGVLATKNAIIPYGVGVDIGCRMALSVYDIPEDFYFENEAKFKKELITNSI
FGAGHGFHGQYKSDHAVLENETFNMNPFVKNLKDKAWSQLGSSGGGNHFVEFGIMEFAKD
DAVLNIPKGKYVALLTHSGSRGMGATIAGHYTKIAKDECKLPEVAKNLAYLDMNSQLGQE
YWLAMNLAGDYASACHEIIHNKMERALGATILAKVENHHNFAWKEIWNGEEVIVHRKGAT
PAGKGVMGIIPGSMTAPGFLVRGKGEENAINSASHGAGRQMSRTQAIKNITQTEMKSILR
DHGVTLIGAGLDEAPMAYKDINQVMEAQKELVDVVAKFTPKLVRMADDGSKED
NT seq
1422 nt
NT seq
+upstream
nt +downstream
nt
atgaaaacacaaataaacggtacagatatattagaattaggattcccagaaggaaaaata
attggaattgccttaaaaataaacagcaaaagaaacggattcacaagagacgaaatgatt
gccaatttcaaaaacgtcttagaaactccagaaaactatatagacgataaaatcttcagc
aaactggctgtggctttaatcgaaaaatcgaatgaaaaaccagaagatttcattgcttta
aatcagaatccgaatgcgtattcggcttacggattggatcatatcgaagacggagccaga
aaacaaatggaagtggccatgaaactgccagttaccgttgcgggagctttaatgccagac
gcacaccaaggttacggattaccaattggcggagttttagccacaaaaaatgccattatt
ccgtatggtgttggagttgatattggatgtagaatggcgttgtcggtttatgatattcca
gaggatttttactttgaaaacgaagcgaagttcaaaaaagaattaattacgaattccatt
tttggagcgggtcacggatttcacggtcagtacaaatcagatcatgcggttttagagaac
gaaacgtttaatatgaatccgtttgtgaagaatttgaaagataaagcctggtcgcaatta
ggatcttcgggtggcgggaatcactttgtggaattcggaatcatggaatttgcgaaagac
gatgcggtcttgaatatcccaaaaggaaaatacgtcgctttgttaacgcattctggttca
cgcggaatgggagcaaccattgccggacattatactaaaatagccaaagacgaatgtaaa
cttccagaagttgccaaaaacttggcgtatctggatatgaactcgcaattaggacaagaa
tactggcttgcgatgaatttggcgggagattacgcttcggcttgtcatgagattatccat
aacaaaatggaacgcgctttgggtgcgacgattttagccaaagtcgaaaaccatcataat
tttgcctggaaagaaatctggaacggcgaagaagtgatcgtacatagaaaaggagcaacc
ccagccggaaaaggcgttatgggaatcattccgggaagtatgaccgcaccgggatttttg
gtgagaggaaaaggtgaggagaatgccattaattcggcttcgcatggagcaggaagacaa
atgagcagaacccaagccataaaaaacattacacaaaccgaaatgaaatcgatactgaga
gatcatggcgttacgcttattggagcaggtctggacgaagctccaatggcgtataaagat
atcaatcaggttatggaagcgcagaaagagttagtcgatgttgttgccaaattcacgccg
aaactggttagaatggctgatgacggaagcaaggaagactaa
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