Flavobacterium johnsoniae UW101: Fjoh_4987
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Entry
Fjoh_4987 CDS
T00508
Name
(GenBank) Exonuclease, RNase T and DNA polymerase III
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
fjo
Flavobacterium johnsoniae UW101
Pathway
fjo03030
DNA replication
fjo03430
Mismatch repair
fjo03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
fjo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Fjoh_4987
03430 Mismatch repair
Fjoh_4987
03440 Homologous recombination
Fjoh_4987
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
fjo03032
]
Fjoh_4987
03400 DNA repair and recombination proteins [BR:
fjo03400
]
Fjoh_4987
Enzymes [BR:
fjo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
Fjoh_4987
DNA replication proteins [BR:
fjo03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
Fjoh_4987
DNA repair and recombination proteins [BR:
fjo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
Fjoh_4987
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
ExoX-like_C
RNase_H_2
Motif
Other DBs
NCBI-ProteinID:
ABQ07986
UniProt:
A5F9Y6
LinkDB
All DBs
Position
complement(6022977..6023747)
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AA seq
256 aa
AA seq
DB search
MELKLNKPICFFDLETTGIDIGKDRIVEISIFKVFPNGNKESKTWLVNPTIPIPPQTTAV
HGITDEKVANEPTFAELAPLVHNMIKDSDLAGFNSDRFDIPLLAEELLRAGVDFDMKNKV
SVDVQTIFHKMEERTLSAALKFYCGKSLDNAHSAEADTMATYEILKAQLDRYPELENDMK
SLSEFTTRKRIADFAGMIAFDNDDEEIFTFGKHKGAKVEKVLETEPGYFSWIQNADFPLY
TKKVLTGIKLRKLNTK
NT seq
771 nt
NT seq
+upstream
nt +downstream
nt
atggaattaaaacttaacaaaccaatctgcttttttgaccttgaaacaactggaattgat
atcggtaaagatcgaatagtagaaatttcgatatttaaagtttttccaaacggaaataaa
gaaagtaaaacctggctggttaatccaacaattccaattcctccacaaactacggcggtt
cacggcattactgatgaaaaggtagccaacgaaccaacctttgccgaacttgctccgctg
gttcataatatgataaaagacagcgatcttgcaggttttaattcagatcgttttgatatt
ccgctgctggcagaagaactgcttcgtgccggagttgattttgatatgaaaaataaagtt
tcggtagatgttcagactatttttcataaaatggaagagcgtacattaagtgcggcttta
aagttttactgcggaaaaagtcttgataatgcacactctgcagaagcggatacaatggca
acttacgaaattttaaaagcgcagttagatcgttatccggaattagaaaacgatatgaaa
tcattgtctgagtttacaactcgtaaacgaattgctgattttgccggaatgatcgctttt
gataatgatgatgaagaaatctttactttcggaaaacacaaaggggcaaaagttgaaaaa
gtactggaaacagagcctggatatttcagctggattcaaaacgccgattttcctttgtac
accaaaaaagttctgacagggattaaattgagaaaattaaatacaaaataa
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