Flammeovirga kamogawensis: KM029_03110
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Entry
KM029_03110 CDS
T07412
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
fka
Flammeovirga kamogawensis
Brite
KEGG Orthology (KO) [BR:
fka00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
fka03009
]
KM029_03110 (rlmD)
Enzymes [BR:
fka01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
KM029_03110 (rlmD)
Ribosome biogenesis [BR:
fka03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
KM029_03110 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
Cons_hypoth95
TRAM
Methyltransf_25
MTS
Methyltransf_15
FtsJ
TRM5-TYW2_MTfase
PCMT
PrmA
Methyltransf_11
N6_N4_Mtase
Motif
Other DBs
NCBI-ProteinID:
QWG07938
LinkDB
All DBs
Position
1:783491..784900
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AA seq
469 aa
AA seq
DB search
MARRRKNIVLEKVTIIDVGSEGKAIAKTEDNMTVFVTGAVTGDVCDLQVTKKRKTFMEAR
PIKFYEYSDKRVEPFCEHFGVCGGCKWQMLDYKWQLHYKQKQVVDQLTRIGKIDLPEIES
ILGSEQTREYRNKMDFTFTSNRWLTKEQMETEDPTRENRGIGLHLPGMWNKVLHLNDCYL
QNKPSDEIRKEAYQFVLDNNLTAFNHYDEKGLLRNLIIRTSSTKDLMVMVQFHDNDQEQI
DLFMENLKVKFPQITSLLYVINQKKNDSYHDLDFKVYNGLPYIVEEMEGLKFRVGPKSFY
QTNSDQAYNLYKVAREFADLTGEERVYDLYTGTGTIAQFVSRKAKEVIGIEYVEDAIKDA
KINSELNSIDNCKFFAGDMKDILTKNFIKKHGDPDVIITDPPRAGMHEAVINQILEVEPK
RIVYVSCNPATQARDLALLDPKYKVTRVMPVDMFPQTYHVENVVALELK
NT seq
1410 nt
NT seq
+upstream
nt +downstream
nt
atggcaagaagaaggaaaaacatagtgttagagaaagttacaatcattgatgttggaagt
gaaggcaaggcaattgctaaaactgaagataatatgactgtttttgttacaggtgcagta
accggagatgtttgtgatcttcaagtaacaaagaagagaaaaacatttatggaagctcgt
cctatcaagttttatgaatattctgataagagagtagaacctttctgtgagcattttggt
gtttgtggcggatgtaaatggcaaatgttagattataagtggcaattgcattacaaacaa
aaacaagttgtagaccagctgactcgaattggtaaaattgatttacctgaaattgaaagt
attttaggttctgaacaaacaagagagtacagaaataaaatggactttacgtttacatca
aatagatggttaacgaaagagcaaatggaaacagaagaccctacaagagagaatagaggg
attggtttacatttaccaggaatgtggaataaagtacttcatttaaacgattgctattta
caaaataagccttcagatgaaattcgtaaagaggcgtatcaatttgttttagataataac
ttgactgcttttaatcattatgatgaaaaaggattattaagaaaccttattattagaact
tcttcaactaaagatttaatggtaatggtacagttccatgataacgatcaagaacagatt
gatctttttatggaaaacctgaaagtgaaattccctcaaatcacatcattactatatgta
attaatcagaagaagaacgatagctaccatgatctagactttaaggtatacaatggatta
ccttatattgtagaagaaatggaaggtttgaagttccgcgtaggtccaaaatctttttat
caaaccaattctgatcaagcatataacctttataaagtagctcgtgaatttgcagattta
actggagaagaaagagtgtatgatttatatacaggaactggtacgattgctcagtttgtt
tctagaaaagcaaaagaagtaattggtattgaatatgttgaagatgcaattaaagatgcc
aagattaattctgaattaaatagcatcgataattgtaaattctttgctggtgatatgaaa
gatatcttgacaaagaattttattaagaagcatggtgatccagatgttattattaccgat
cctcctagagctggtatgcatgaagctgtaattaatcagattcttgaagttgaacctaaa
agaattgtttacgtaagttgtaacccagctacacaagcaagagatttagcactattagat
cctaaatataaagtgacaagagttatgcctgttgatatgtttcctcaaacataccatgta
gaaaatgtagttgctttagaattgaaataa
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