Flammeovirga kamogawensis: KM029_03250
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Entry
KM029_03250 CDS
T07412
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
fka
Flammeovirga kamogawensis
Brite
KEGG Orthology (KO) [BR:
fka00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
fka03032
]
KM029_03250 (topA)
03400 DNA repair and recombination proteins [BR:
fka03400
]
KM029_03250 (topA)
Enzymes [BR:
fka01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
KM029_03250 (topA)
DNA replication proteins [BR:
fka03032
]
Prokaryotic type
DNA Topoisomerases
KM029_03250 (topA)
DNA repair and recombination proteins [BR:
fka03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
KM029_03250 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
HTH_48
Toprim_4
Motif
Other DBs
NCBI-ProteinID:
QWG07965
LinkDB
All DBs
Position
1:complement(817821..820256)
Genome browser
AA seq
811 aa
AA seq
DB search
MTKNLLIVESPAKAKTIEKYLGEGYTVRSSYGHVRDLKKGNDAIDVDHDFIPHYEVSPDK
KDVIRELKKLSKDAEMVWLATDDDREGEAISWHLKETLKLKDNDTKRIVFREITKSAIQS
AIKHPRTIDYDLVNAQQARRILDRLVGFELSPVLWKKIQRGLSAGRVQSVAARLVVERER
EIEAFNAKDFFKVIATFELGNNKFLEAELSTKFKTKEEANSFLQDCLGADFSITDIKTRP
GKKTPAPPFTTSTLQQEASRKLGYSVASTMSIAQKLYEAGHITYMRTDSLNLSNEAIQSA
TEEISRVYGNDFVQERHFKTSNKGAQEAHEAIRPTNFKNHKLELSDNREARLYDLIWKRA
VASQMADAKLERTTAEVTTPKRAEKFVAKGEVIKFEGFLKAYIESNDDEIDEDEDTKGML
PPLSIGQDMPLDQMNATQRFSRPPARYTEASLVKTLEEKGIGRPSTYAPTISTIQRREYV
IKEARDGKERNYVKIVLKNNEVNEKQLTETYGAEKSKLFPTNMGMVVNDFLVKHFPNVVD
YSFTANVEEQFDEIAHGNLEWQKMLGGFYKPFHDTVVDTEENADRAEAHAERELGIDPAT
GKKVITRLGRFGPIAQIGDQEDEDKKFASLRKGQYLETITLEDALELFKLPRTIGTYEDK
VVVAAIGRFGPYIRHDGKFVSLGKEYAPETVELDVAIGLIEAKRKADAEKLIKTFEEEEN
LQLLNGRWGPYISYNKANIKIPKELKEKAKELTYEEVKKIIEEAPEPKTRGKKAAATKKE
PAKKKAATKKPAAKKAPAKKKVTTRKTATKK
NT seq
2436 nt
NT seq
+upstream
nt +downstream
nt
atgactaagaacttattaattgtcgagtcacctgcaaaggcaaagactatcgaaaaatac
ctaggtgagggctacaccgtaagatcaagttatggccatgtacgtgacttaaaaaaagga
aacgatgcaattgatgttgaccacgatttcattccccattatgaagtttctcctgataaa
aaggacgtaataagagagttaaagaaattatcaaaggatgctgaaatggtatggttagca
accgatgatgaccgcgaaggagaagctatatcttggcatcttaaagaaacacttaaatta
aaagataacgatactaaaaggattgtatttagagaaattactaaatctgcaattcaatct
gcaattaagcacccaagaactattgattacgatcttgttaatgcacaacaagcaagacgt
attttagatagattagttggttttgaattatctccagttttatggaaaaaaattcaaaga
ggtctttctgcagggcgtgtacaaagtgtagctgcaagattagttgttgaacgtgaaaga
gaaattgaagctttcaatgctaaagacttttttaaagtgattgcaacttttgaactaggt
aataataagtttttagaagctgaattaagtacaaagtttaaaacaaaagaagaagcaaat
tctttcttacaagattgtcttggtgcagatttttcaataacagatataaaaacaagacct
ggtaagaaaacaccggctcctccctttacaacttctacacttcagcaagaggcaagtaga
aaattgggatattcagttgcctctacaatgtcaattgctcaaaaactatatgaagctggt
catattacatatatgcgtacagattcattaaacttatcaaatgaagcaattcaatctgca
acagaagaaatatctagagtttatggaaatgattttgttcaagaaagacatttcaaaaca
tctaataaaggtgcacaagaagctcacgaggcaattagaccaaccaactttaagaatcat
aaactagagttgtcagacaatcgtgaggcacgcttatatgatctaatatggaaaagagct
gtagcttctcaaatggctgatgcaaagctagagagaactactgcagaggttactactcca
aaaagagctgagaaatttgtagcaaaaggtgaagtgatcaaatttgaaggattcttgaaa
gcatatattgaatcaaatgatgatgaaatagatgaggatgaagatactaaaggtatgtta
cctccgctttcaattggtcaagatatgcctctagatcaaatgaatgctacccaacgtttt
tctagacctccagcacgttatactgaagctagtttagttaagacgttagaagaaaaaggt
atcggtagaccatctacttatgcacctacaatttctacaattcaacgtagagagtatgtg
attaaagaagctagagatggtaaagaaagaaattatgtaaaaatagttctgaagaataat
gaggtcaatgaaaaacaattgactgaaacttatggagctgaaaaaagtaaattgttccca
acaaatatgggaatggttgtaaatgatttcctcgtaaagcattttccgaatgttgttgat
tattcatttacagcgaatgtagaggaacaatttgatgaaattgctcatggaaacctagaa
tggcagaaaatgcttggtggtttttataaaccattccatgataccgttgttgacacagaa
gagaacgctgatagagctgaagctcatgcagaaagggaacttggaattgaccctgcaact
ggtaaaaaagtaattacacgcttaggtagatttggtccaattgcacaaatcggtgatcaa
gaagatgaagacaagaagtttgcatctttacgaaaaggccaatacttagaaactattact
cttgaagatgctcttgaattattcaagcttccgagaacaataggaacctacgaagataaa
gttgttgtcgctgcaattggtcgttttggaccttatataagacatgatggaaagtttgtt
tctttaggaaaagaatatgctccagaaactgttgaattagatgtagcaattggtttaatt
gaagcaaagcgaaaagcagatgctgaaaaactaattaaaacttttgaagaagaagagaac
ttacaactcctaaatggtagatggggaccatatatttcttataataaagccaatattaaa
atccctaaagagttaaaggagaaagcaaaagagctaacttacgaagaagtaaaaaagata
attgaagaggctccagagccaaaaacaagaggtaagaaagctgcagcaacaaaaaaagaa
cctgcaaaaaagaaagccgcgacaaagaaacctgcagctaaaaaagctccagcaaagaaa
aaagtcactacaagaaaaacggcaacgaaaaaataa
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