Flammeovirga kamogawensis: KM029_04830
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Entry
KM029_04830 CDS
T07412
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
fka
Flammeovirga kamogawensis
Pathway
fka03030
DNA replication
fka03430
Mismatch repair
fka03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
fka00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
KM029_04830 (dnaE)
03430 Mismatch repair
KM029_04830 (dnaE)
03440 Homologous recombination
KM029_04830 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
fka03032
]
KM029_04830 (dnaE)
03400 DNA repair and recombination proteins [BR:
fka03400
]
KM029_04830 (dnaE)
Enzymes [BR:
fka01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
KM029_04830 (dnaE)
DNA replication proteins [BR:
fka03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
KM029_04830 (dnaE)
DNA repair and recombination proteins [BR:
fka03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
KM029_04830 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
RNase_T
tRNA_anti-codon
DUF655
DUF1433
Cytochrom_C_2
Motif
Other DBs
NCBI-ProteinID:
QWG09155
LinkDB
All DBs
Position
1:complement(1202397..1206662)
Genome browser
AA seq
1421 aa
AA seq
DB search
MAYIIYDTETTGLPKNFNAPITDLENWPRVVQLAWQLHDDHGKLIKAQNLIVKPDGYTIP
FNATKVHGITTDHAIEHGHDLKEVLEEFRIDLAKADRQIGHNLQFDINVTGAEFLRCDLE
SEIMNVEVIDTMISSTEFCALPGGRGGKFKSPSLTELHNKLFGVPFADAHDAAYDVDATA
RCFFGLIEHGVVVPIHDVPVEEVVYEAPDLDEANFASKTQATELGRGKVSREEGLARLKD
VQFTHLHTHTQFSILRATCTIGDLVAKSKEEGCEAVCLTDHGNMYTAYHFVRDVLKAELK
PIIGLEFYIVKEHKKRKFTRDDPDRRSSQVLIAKNKAGYHNLAKLSSQGFIDGAYTDRDG
TYARIDKELLLEYKGDLIATTGGLQSPVNNLILNVGEEQAEQEFVWWLENFQDDFYIELC
RHGLEEEDHVNEVLLRFAEKYDVKYFAANNVYYIDEAGSDAHDILLCVKDGEKKSTPIGR
GRGFRFGFPNNQFYFKTGDEMKELFYDLPDAIECTQEIVDKIEPYKLQRDVLLPAFDIPE
EFIDPEDEKDGGKRGENAFLKHLTYVGAEKRYGTITEDIKERLDFELATIQNTGYPGYFL
IVQDFTTEARNMGVSVGPGRGSAAGSAVAYAIGITNVDPIKYDLLFERFLNPDRVSLPDI
DIDFDDEGRQKIINWVVDKYGFNQVSHIITYGTMAAKSSIKDTARVMDLPLSDSDRLAKL
VPDMKLKKLFGMSDQQLEDKLNSEQMEMANQLKAVAEEHSLEGQVLNTARVLEGSIRNTG
IHACGIIITPDDITKFIPVTTAKDADLLVTQFDNSVVENAGMLKMDFLGLRTLSIIKDAI
KLIKLRHGIQIDPDDIPLDDRKTYELYQRGETNGTFQFESAGMQKHLRALKPDVFGDLIA
MNALYRPGPLEYIPNFIARKHGDEEIVYDIPKMDEYLAETYGITVYQEQVMLLSQSLAGF
TKGEADMLRKAMGKKIFALLEQLKPKFIEGGTGNGHDQKALEKVWTDWEAFAAYAFNKSH
STCYSVVAFHTGYLKANYPAEYMASVLTHNMNDIKKVTFFMEECSRMGIPVLGPDVNESE
YKFSVNAEGAIRFGLGAVKGIGTGPINAIIEGRQEKPYESIFDFVERVNLKAVNRKVMES
LAYAGSFDNYEFHRAQYFHIPEGEKYSGIDLILRYGNRVQADKLSAQASLFGSSTGGSVP
PPKLPELEQWSKLVELRFEKEVVGFFISGHPLDMYRMELDNFCIPVKNIDLHKQQEIKVG
GMITEAKILESKNGNKFGILTLEDYEQTTQMAMFGENFNLNKHFLNEGDFVCILGQVKEN
YRTPGLWELSPKKIMPLSSVKDHFCKGIDLSIDVMALTDDTIMELVSIVSEHQGTREMSL
EVISREDNMVVNLFSRSYKVDPSTELLNELDQLEGIEYRVF
NT seq
4266 nt
NT seq
+upstream
nt +downstream
nt
atggcatatatcatatacgatacggaaaccacaggtttaccgaagaactttaatgcacca
ataacagatctagaaaactggccaagagtggttcaactcgcttggcagttacacgacgat
catggtaaattaattaaggcacaaaacttaattgtgaagcctgatggatataccatacca
tttaatgcaacaaaagttcacggtattactacagatcatgccattgaacatggacacgat
ttaaaggaggtactcgaagaatttcgtattgatttagccaaagctgatagacagattggt
cataacctacaatttgatataaatgtaacaggtgcggaatttctacgttgcgatctagaa
agtgagatcatgaatgtagaggttatcgataccatgatttcttctacagaattttgtgca
ttacctggtggtagaggaggtaaattcaaatctccttcacttacagaattacataataaa
ttattcggtgttccttttgcagatgctcacgatgcagcgtacgatgttgatgccacagca
agatgtttctttggtttaattgagcatggtgttgttgttccaattcatgatgttcctgta
gaagaggttgtttatgaagcgcctgatttagatgaagccaattttgcatctaaaacacaa
gcaacagaattaggtagaggaaaggttagtagagaggagggtttagcacgtttaaaagat
gtgcaatttactcatttacatacccatactcaattttctatccttagagctacatgtaca
attggagacttagtagcaaaatctaaagaggaaggttgcgaagctgtatgccttaccgat
catggtaatatgtacactgcttatcactttgttcgtgatgttttaaaagcagaattaaag
ccaataataggtttagaattttacattgtaaaagagcataaaaagagaaagtttactaga
gacgatccagacagaagatcttctcaggtacttatcgcaaaaaataaagcgggctaccat
aaccttgcaaaattatcctctcaaggctttattgatggggcatatacagacagagatggt
acatatgcacgaattgataaagaacttcttttagaatataaaggtgatttaatcgcaaca
actggcggtttacaaagtcctgtaaataaccttattcttaatgtgggtgaagaacaggcg
gaacaggaatttgtttggtggttagaaaatttccaagatgatttttacatagaactttgt
agacatggtttagaagaagaagaccatgtaaacgaggttttattacgttttgcagagaaa
tatgatgtgaagtattttgcagcaaacaacgtatactatatagatgaagcaggttctgat
gcacacgatatcttattgtgtgtaaaagatggcgaaaagaaatcgacaccaattgggaga
ggtagagggtttcgttttggtttcccaaataatcagttctatttcaaaacaggtgatgaa
atgaaagagctgttctacgatttaccagacgcaatagaatgtactcaagaaattgtagat
aaaatagagccgtataagttacaacgtgatgtacttttacctgctttcgatatccctgaa
gagtttattgacccagaagatgaaaaagatggcggcaaaagaggtgaaaacgctttctta
aaacacctaacgtatgttggggcagaaaaaaggtacggcacaattacagaagatattaaa
gaacgtctagattttgaattggcaacgattcaaaatacaggataccctggttatttctta
attgtacaagattttacaacagaagctagaaatatgggtgtttctgttgggcctggtcgt
ggttctgcggcaggttctgcagttgcttatgctattggtattaccaatgtagaccctatt
aaatatgatttgctatttgagagattccttaacccagaccgtgtatctcttcccgatatt
gatattgactttgatgatgaaggtcgacaaaagatcattaactgggtagttgataaatac
ggtttcaaccaagtatctcatattatcacttacggtacaatggcggcaaaatcgtctatc
aaagatactgcaagggttatggatttacctttaagtgattctgatcgtttggcaaaactt
gttcctgatatgaagctgaaaaagctttttggaatgagcgatcaacaactagaagataaa
ctgaactctgaacaaatggaaatggccaaccagctaaaagctgtagccgaagaacatagt
ttagaagggcaagtgttaaatacggcaagagtattagaaggttcaattcgtaatacgggt
attcatgcctgtggtattattatcacaccagatgatattacgaagtttattcctgtaact
accgcaaaagatgcagatcttcttgttactcagtttgataactcagttgttgagaatgca
ggaatgctaaaaatggacttcttaggattgagaactttatcaatcataaaagatgccatt
aaactaattaaattaagacatggaatacaaatcgacccagatgatattccattagatgat
agaaagacatacgaactgtatcaacgtggagagaccaacggtactttccagtttgaatca
gcaggtatgcaaaagcacctaagagcactaaagcccgatgtttttggtgatttgattgcc
atgaacgccctgtatagaccaggtcctttggaatacatccctaactttatcgcccgtaaa
catggtgatgaagagattgtatatgatattccaaaaatggatgaataccttgcagaaacg
tatggtattacggtttatcaagaacaggtaatgctcttgtcacaatctttggcagggttt
acaaaaggtgaagcagatatgttgcgtaaggcaatgggtaagaaaatatttgccttgcta
gaacaactaaaacctaagtttattgaaggaggaactggcaatggacacgatcagaaagca
cttgaaaaagtatggactgactgggaagcctttgctgcatatgcatttaacaagtctcac
tcgacctgttactctgttgttgccttccacacaggttatttaaaagccaattaccctgca
gaatacatggcttctgtacttactcataatatgaacgatatcaaaaaggtaacgttcttt
atggaggagtgtagcagaatggggatacctgttttagggccagatgtaaatgaatcggag
tataaattctctgtaaacgcagaaggtgcaattcgatttggattaggggctgtaaaagga
attggtacaggaccaattaatgcaattattgaaggacgccaagagaaaccttatgaatct
atcttcgattttgttgaacgtgtcaacttaaaagctgttaaccgtaaggtgatggaaagt
ttagcttacgcaggttcttttgataattatgagtttcatagagcacaatattttcatatt
cctgaaggggagaaatattctggaattgaccttatcctacgttatggaaatagagttcaa
gctgataagctatctgcacaagcttctttatttggtagttctacaggcggatctgttcct
cctccaaaattacccgaattagaacagtggtctaaattagtagagcttaggttcgagaaa
gaagttgtaggtttctttatttcaggacatccattagatatgtacagaatggaattagat
aacttctgtattcctgtaaaaaatattgacttacataaacaacaagaaattaaagtgggg
ggtatgattaccgaagctaaaattcttgaaagtaaaaacggtaataagtttggtatcctt
actttagaagattacgaacagaccacccaaatggcaatgtttggtgagaactttaatcta
aataaacactttttaaacgagggtgattttgtttgtattttaggtcaagtaaaagaaaat
tatagaacgccaggtctttgggagttgagtcctaaaaagataatgccattgtcttcagta
aaagatcatttttgtaaagggatagatttatcaatagatgttatggccttaacagatgat
actattatggaattagtttctatagtttctgaacatcaaggtactagagagatgtcgtta
gaggtaatttctagagaggataatatggtagttaatttattctcaagatcttacaaagtt
gacccgtctaccgagttactaaatgagttagatcagttggaagggatagaatacagagta
ttttag
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