Flammeovirga kamogawensis: KM029_11270
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Entry
KM029_11270 CDS
T07412
Symbol
uvrA
Name
(GenBank) excinuclease ABC subunit UvrA
KO
K03701
excinuclease ABC subunit A
Organism
fka
Flammeovirga kamogawensis
Pathway
fka03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
fka00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
KM029_11270 (uvrA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
fka03400
]
KM029_11270 (uvrA)
DNA repair and recombination proteins [BR:
fka03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
KM029_11270 (uvrA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
KM029_11270 (uvrA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
UvrA_inter
SMC_N
UvrA_DNA-bind
AAA_21
AAA_16
AAA_29
nSTAND1
RsgA_GTPase
DnaJ_CXXCXGXG
Viral_helicase1
AAA_23
nSTAND3
RNA12
Motif
Other DBs
NCBI-ProteinID:
QWG05948
LinkDB
All DBs
Position
1:2815354..2818176
Genome browser
AA seq
940 aa
AA seq
DB search
MRSVDQLNPKEYIIVKGARVNNLKNVDVSIPRNSFVVITGVSGSGKSSLAFDTLFAEGQR
MYVESLSSYARQFLGRMEKPEVEYIRGICPAIAVEQKVSTKNPRSTVGTTTEIYDYLKLL
YARIGKTYSPVSGKEVSKSNVTDIVNYIHDFDEGTRFIVSCPLALQEGRTLDVVLKLLLQ
QGFTRVIAKGETLFIEELLENIEKGEKFALEDLEMLIDRNAVKKGDEENQFRIADSVQTA
LFEGRGECRIQIVQKGKEPISHLFSDKFEADGILFEEPSVNLFSFNNPYGACKRCEGFGK
VLGIDADLVIPDKSLSVLDDAIAPWRTETMKKWIKPLLDASHETGFPIFRSYQDLSEEEK
NILWNGLGKFKGINAFFKHLESKTHKIQYRVMLSRYRGRTVCPECHGSRLRKDAAYVKIN
DKSIIDVVLMPIAEASEYFNQITLNKHDHEIADRLLAEIKNRLQYMNKVGLGYLTLNRLT
STLSGGEYQRIKLATSLGSALVGSMYILDEPSIGLHPRDTQNLIAVLLELKRLGNTVIVV
EHEEEVMKAADEIIDIGPDAGSYGGELRFQGTLQDAIDHPEISHTTRYLSGKSSIPTPEV
RRKWTEYIEVIGARENNLKNLNVKFPLGIVSCVTGVSGSGKSTLIKRCLTPAITRALGHH
TDEKPKIDRIDGAIKAITKVEFVDQNPIGKSSRSNPVTYVKAYDAVRELFSKNELSVHRG
YKPAFFSFNVDGGRCEACQGEGTSKIEMQFMADIFLPCESCKGKRFKNEILEVKYKEKSI
ADILDLSVDEAVSFFADQKKIIQRLQPLLDVGLGYVRLGQSSNTLSGGEAQRVKLASFLA
KGTLKESERVLFIFDEPTTGLHFHDIDKLMKAINALVEKGHSAVIIEHNVEVIKTADWVI
DIGPEGGKDGGTIVFEGTPEELIKNGKGYTAHYLKAAMTL
NT seq
2823 nt
NT seq
+upstream
nt +downstream
nt
atgcgctcagtagaccaactcaaccccaaagaatacattatcgttaaaggtgcccgtgtc
aacaatttaaaaaatgttgatgtatccataccaagaaatagttttgttgttataacaggt
gtttcaggttctggtaaatcctctttagcctttgatactttatttgccgaagggcaacga
atgtatgttgaaagtttgagttcatatgcacgtcaatttcttggtcgaatggaaaaacca
gaggtggaatatattagaggtatttgccctgccattgctgtagaacagaaagtttcaaca
aaaaacccaagatcaacagtaggaacaactacagagatttatgattatctaaaacttctc
tatgctagaattggcaaaacatattctcctgtatctggtaaagaagttagtaaatctaat
gtaacggatattgtaaattatattcatgattttgatgaaggaactcgctttattgtttct
tgccctcttgcattacaagaaggacgaactttagatgtagttctgaaattacttttacaa
caagggtttacccgagtaatagcaaaaggtgaaactttatttattgaagagcttcttgaa
aatattgaaaaaggtgaaaaatttgccttagaagatcttgagatgctaatagatcgaaat
gctgttaaaaaaggtgatgaagaaaatcaatttagaatagcagattctgttcaaactgca
ttatttgaaggccgtggagaatgtcgtattcaaatagttcaaaaagggaaagagcctatc
tctcatttattttctgataaatttgaggctgacggtattctatttgaagagccaagtgtc
aatttatttagctttaacaatccttatggcgcttgtaaacgttgcgaaggatttggtaaa
gttttaggaatagacgctgatctagtcattccagataagtcactttctgttttagatgat
gctattgctccatggagaacagaaactatgaaaaaatggataaaaccacttttagatgca
tcgcatgaaactggtttcccaattttcagatcatatcaagatctatcagaagaagaaaaa
aatatattatggaatggtttagggaaatttaaaggaattaatgccttctttaaacaccta
gaatcaaaaacccataaaattcaatatagagtaatgctttctcgttacagaggaagaact
gtttgtcctgaatgtcatggttctaggctaagaaaagatgcagcttatgtaaaaatcaac
gataagtctattattgatgttgtgttaatgcctattgcagaagctagtgaatattttaat
caaattacacttaataagcacgatcatgaaattgcagatagattattagctgaaatcaaa
aaccgacttcaatatatgaataaagtcggtttaggatacctgacattaaatagattaaca
agtaccttatcaggaggagaatatcaacgtattaagttggcaacatcacttggtagtgca
cttgttggttctatgtatatcttagatgaaccaagtatcggattacatcctagagatact
caaaatctaattgctgtattattagaactaaaaaggttaggcaatactgtaattgtagta
gagcatgaagaagaagtaatgaaagctgccgatgaaattatcgacattggacccgatgct
ggtagttatggcggtgaacttcgttttcaaggtacattacaagatgctatagatcaccct
gaaatatcacatacaactagatatttaagtggtaaatcaagtattcctactccagaagtc
cgcagaaaatggactgaatatattgaagtaattggagcaagggaaaacaatcttaaaaac
ctgaatgtgaaatttcctttaggtattgtttcttgtgtaacgggtgtttcaggttctgga
aaatctacactaatcaaacgttgtctaactcctgctattacaagagctttaggacatcat
acagatgaaaagcctaaaattgaccgtatcgatggtgctataaaagcaatcacaaaagta
gaatttgtagatcaaaacccaatcggtaaatcatctagatcaaaccctgttacttatgtt
aaagcatatgatgctgtaagagaattattctctaaaaacgaactttcagttcatagaggg
tacaaacctgcattcttttcttttaatgttgatggaggtcgttgtgaagcctgtcaaggt
gaaggaacttctaaaatagagatgcaattcatggcagatatttttcttccatgtgaaagt
tgcaaaggaaagcgctttaaaaatgaaattcttgaggttaaatataaagagaaaagtatt
gcagatattctagacttaagtgtagatgaagccgtgagtttctttgcagatcaaaagaaa
attattcaacgcttacaaccgcttcttgatgtaggtttaggttatgttcgcctagggcaa
tcatctaatacattgagcggaggtgaggcacaaagggttaagcttgcatccttcctagcc
aaaggtactctaaaagaatctgagcgtgtattatttatctttgatgaacctacaactgga
cttcattttcatgatattgacaaattaatgaaagcaattaatgctttagttgaaaaaggt
cattcagcagtaatcatcgagcataacgtagaagttataaaaacggcagattgggtaatt
gatattggacctgaaggaggtaaagatggcggtacaattgtttttgaaggtactccagaa
gaattaattaaaaatggaaaaggatatacagcacattatttaaaagctgcaatgacttta
taa
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