Flammeovirga kamogawensis: KM029_15750
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Entry
KM029_15750 CDS
T07412
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
fka
Flammeovirga kamogawensis
Pathway
fka03410
Base excision repair
fka03430
Mismatch repair
fka03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
fka00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
KM029_15750 (recJ)
03430 Mismatch repair
KM029_15750 (recJ)
03440 Homologous recombination
KM029_15750 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
fka03400
]
KM029_15750 (recJ)
DNA repair and recombination proteins [BR:
fka03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
KM029_15750 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
KM029_15750 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
KM029_15750 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHH
DHHA1
Motif
Other DBs
NCBI-ProteinID:
QWG06744
UniProt:
A0ABX8GT25
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All DBs
Position
1:3881462..3883162
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AA seq
566 aa
AA seq
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MEKVWKILPKANQDHVKELLKQPNVPKIIAELLVQRGVTTIPKARDYFRPTLEKLYDPFL
MKDMDIAVARLTLAIEHGERILFFGDYDVDGTSAVALFMHFFREVYDNIDFYIPDKYTEG
YGVSLRGVEYAAQTNCQLIISLDCGIMSHEAIEESIHRNIDFIVCDHHQLGDTIPKATAV
LNPQRPDCNYPFKGLSGCGVGFKFLQGFCQKHGIDPTPLWQHLDLVVLGTACDVVPMTDE
NRVIANEGIKYLRKSTKPGIVALFKVLNREQSEIQVQDLGYTFGPIINAAGRIAHAQISA
ELLSTIDNKEAKELAEELNRLNQLRKNYDRTNTEEALVMAEENKSAPALVLYNESWHKGV
LGIVASRCAEKFGKPTVALTLSRDEVTGSARAIANFDIHKALTASAEFLDQFGGHTSAAG
LSLKKENLSAFTDKFEAEVKNLTNGKNFVSELNVDLEIDLADLDLASATIINKMSPFGHE
NPLPLFIAKNVKVATTPRVLKDKHLKMQVFQEEGDQKIDAIAFNQADQLDVVMEGFFDIL
FRLDINEYRGNKTLQLNIKEISTSKK
NT seq
1701 nt
NT seq
+upstream
nt +downstream
nt
atggagaaagtgtggaaaattttacccaaggctaatcaagatcacgttaaggagttatta
aaacaacctaatgttcccaaaataatagcagaattactagtgcaaagaggggtaacaaca
attccaaaagcaagagattattttcgcccaacattagaaaaactgtacgatcctttctta
atgaaagatatggatattgctgtagctaggttaacactagcaattgaacatggcgaaaga
atattgttttttggggactatgatgttgatggaacttctgcggtagcattatttatgcac
ttttttagagaggtatatgataacattgatttttatataccagataagtatacagaagga
tatggtgtgtctttaagaggagtagagtatgcagcacaaaccaattgccaactaataata
tctctagattgtggtattatgagtcatgaagcaattgaggaatctattcatagaaatatt
gattttattgtttgtgatcatcatcaattaggagatactattccaaaagccacagcggtg
ctcaaccctcaacgtccagattgtaattatccttttaaaggtttatcaggatgcggagta
ggatttaagtttttgcaagggttttgtcaaaaacatggtatagacccaacacctttatgg
caacatttagatttagtggttttaggtactgcttgtgatgtagtacctatgacagacgaa
aatagagtgattgcaaatgaaggaattaagtatttaagaaagtctacaaaaccaggaata
gtagccttatttaaagtactgaatagggaacagtctgaaattcaagtgcaagatttagga
tatacttttggtccaataattaatgctgcgggtagaattgctcatgctcaaatttcagca
gagctactatctactatagataataaagaagcgaaagaattagcagaagaattaaatcgt
cttaatcaattaagaaaaaattacgatcgcacaaatacagaagaagcactagtaatggca
gaggaaaacaaatctgcaccggctttagtattatataatgagagctggcataaaggagta
ttaggaatagttgcttctagatgtgcagaaaaatttgggaagcctacagtagcactaact
ttatcaagagatgaagtgacaggatctgcaagagcaattgctaattttgatatacataaa
gctcttactgcaagtgcagaatttctagatcagtttgggggacatacttcagcggcaggt
ttgtcactcaaaaaagaaaatttgtcagcttttacagataaatttgaagcagaagtaaag
aatttgacaaatggaaagaattttgtttctgagcttaatgttgatttggaaattgatcta
gcagacttagatcttgcttcagcaacaataataaataagatgagcccttttggacatgaa
aatccattacctctttttatagctaagaatgtgaaagtagccactacacccagagtatta
aaagataaacatttaaaaatgcaggtctttcaagaagaaggtgatcaaaagattgatgca
atagcttttaatcaagctgaccaattggatgtagtgatggagggattttttgatatttta
ttccgtttggatataaatgagtatcgtggaaataaaacactccaattaaatataaaagaa
attagtacttctaaaaagtag
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