Flammeovirga kamogawensis: KM029_16040
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Entry
KM029_16040 CDS
T07412
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
fka
Flammeovirga kamogawensis
Pathway
fka03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fka00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KM029_16040
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fka03019
]
KM029_16040
03009 Ribosome biogenesis [BR:
fka03009
]
KM029_16040
Enzymes [BR:
fka01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
KM029_16040
Messenger RNA biogenesis [BR:
fka03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
KM029_16040
Ribosome biogenesis [BR:
fka03009
]
Prokaryotic type
rRNA helicases
KM029_16040
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
RAG1_ZnH2
Motif
Other DBs
NCBI-ProteinID:
QWG06800
UniProt:
A0ABX8GV34
LinkDB
All DBs
Position
1:3959157..3960998
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AA seq
613 aa
AA seq
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MAKFSELGLKEELQEAVAELGFEQPTPIQEEVIPTLLTEELDLVGLAQTGTGKTAAFGLP
LLHRVDVSDKRTQGLILCPVRELGLQIAKDLENFAKKIPGLRIVAVYGGSPIDQQIRQLN
RGAHIIVATPGRMHDLIRRNKTDISAVETVVLDEADEMLKMGFKDELDAILDETPEDKNV
WLFSATMPREVARIASNYMTDPKEVTVGTKNTGNKNVKHYCYMVRASDRYEALKRVVDYN
PNVYGIVFCRTRQETKDVAERLMQDGYNADALHGDLSQAQRDYVMGKFRQRTLQLLIATD
VAARGLDVNDLSHVINYNLPDDIETYNHRSGRTGRAGRDGTSIAIVHMREKHRLRAIERV
IKQTFITDPIPSGPQICERQLFHLVDRMHSVEMVEEEIEQYLPKVYEKLEDLSREEIVNR
FVALEFNRFLDYYRGARDLNANDRRDNSNSRERGENNRRSAESGYTRFFINLGKRDEVSP
KELIELINKGVKGDRIDIGRIDLKQNFSFFEVGEGRDQDVISGMGSLEYNGRKIDVEVSN
GAGGGGGRRGGGDRRRGGFSGGGGGRRGGGGYGGGDRRGGGGDRRRGGYGGGGGDRDRRG
NGGGGGRRKYNKD
NT seq
1842 nt
NT seq
+upstream
nt +downstream
nt
atggcaaaatttagtgaattagggcttaaagaagaattgcaagaagcagtagcagagctc
ggttttgaacaaccaacaccaatccaagaagaagtaataccaacacttcttacagaggaa
ttagacttagttggtttagcacaaacaggtactggtaaaactgcggcattcggccttcca
ctccttcatcgcgtagatgtgtcggataaaagaacgcaaggtttaatcttatgtcctgta
cgtgaacttggattacaaattgcaaaagacttagagaatttcgcaaaaaagattcctggt
ttaagaattgtagcagtttacggaggatctccaatcgatcaacaaattcgtcaattaaac
cgtggagcacatattattgtggcaactccaggtcgtatgcacgatttaattcgtagaaat
aaaacagatatttctgcagttgaaactgttgtattggatgaagcagatgaaatgcttaaa
atgggtttcaaagatgagcttgatgcaatcttagatgaaactcctgaagataaaaatgtg
tggttgttctcagcaactatgccaagagaagtggcacgtatcgcttctaactacatgact
gatcctaaggaagttactgtaggcacaaaaaacacaggtaataaaaatgtaaaacattac
tgttatatggtaagagcgagcgatcgttacgaagccttaaaacgtgtagtggattacaac
ccaaatgtttatggtattgttttctgtcgtactagacaagagacaaaagatgtagcagaa
cgtttaatgcaagatggttacaatgcagatgcattacatggtgacttatctcaagcacaa
cgtgactacgtaatgggtaaattccgtcaaagaacattacagttattaatcgcaacagat
gtagctgctcgtggtcttgatgtaaatgatttatctcacgtaattaactacaatcttcca
gacgatatcgaaacgtacaatcaccgttctggccgtacaggtagagctggtcgtgatggt
acttctattgctatcgttcacatgcgtgaaaagcaccgtttgagagctatcgaacgtgta
atcaagcaaacatttattaccgatccaattccttctggaccacaaatctgtgagcgtcag
ttattccacttagtggaccgtatgcactcagtagaaatggtagaagaagaaattgagcaa
tacttaccaaaagtatacgagaaattagaagacttaagccgcgaagaaattgtaaataga
tttgttgctttagaatttaaccgtttcttagattactatagaggtgcaagagatcttaac
gcaaacgatagaagagataattctaacagccgtgagcgtggagaaaacaaccgtagatct
gctgaatctggttacacaagattctttattaatcttggtaaacgtgatgaagttagccct
aaagagttaattgaactaattaacaaaggtgttaaaggtgatcgtatcgacatcggacgt
attgatcttaagcaaaacttctcattctttgaagtgggagaaggtagagatcaagatgtt
atttctggcatgggtagcttagaatacaatggtcgtaagatcgatgtagaggtatctaac
ggtgctggaggcggcggaggtcgtcgtggtggcggagatcgtcgtcgtggtggattcagc
ggtggcggcggaggccgtcgtggcggtggaggctacggtggcggagatcgtcgtggtggc
ggtggagatcgtcgtcgtggtggctacggtggaggcggtggagaccgtgatcgtcgtgga
aatggcggcggaggcggacgtcgtaagtacaataaagactaa
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