Flavobacterium keumense: MG292_00135
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Entry
MG292_00135 CDS
T09003
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
fke
Flavobacterium keumense
Pathway
fke03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
fke00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
MG292_00135 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
fke03021
]
MG292_00135 (rpoC)
03400 DNA repair and recombination proteins [BR:
fke03400
]
MG292_00135 (rpoC)
Enzymes [BR:
fke01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
MG292_00135 (rpoC)
Transcription machinery [BR:
fke03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
MG292_00135 (rpoC)
DNA repair and recombination proteins [BR:
fke03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
MG292_00135 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
WGK94675
LinkDB
All DBs
Position
complement(31064..35371)
Genome browser
AA seq
1435 aa
AA seq
DB search
MMNNRNNKDKNQVKRFDKISIGLASPESILKESRGEVLKPETINYRTHKPERDGLFCERI
FGPVKDFECACGKYKRIRYKGIICDRCGVEVTEKKVRRDRVGHINLVVPIAHIWYFRSLP
NKIGYILGLPSKKLDMIIYYERYVVIQAGIAKNAEGEPLQRLDFLTEEEYLNILDTLPAD
NQYLDDFDPNKFVAKMGAECIMDLLARIDLDELSYSLRHSANNETSKQRKTEALKRLQVV
ESFRESNLNRENRPEWMIMKVVPVIPPELRPLVPLDGGRFATSDLNDLYRRVIIRNNRLK
RLMEIKAPEVILRNEKRMLQESVDSLFDNTRKASAVKTESNRPLKSLSDSLKGKQGRFRQ
NLLGKRVDYSARSVIVVGPELKLFECGIPKDMASELYKPFVIRKLIERGIVKTVKSAKKI
IDKKEPVVWDILENVIKGHPVLLNRAPTLHRLGIQAFQPKLIEGKAIQLHPLVCTAFNAD
FDGDQMAVHLPLGPEAILEAQLLMLASHNILNPANGAPITVPSQDMVLGLYYMTKERLST
PEHKILGQDLTFYSAEEVNIALNEGRLELNARVKIRAKDFNENGELVYKIIQTTAGRVLF
NEVVPEAAGYINDVLTKKNLRDIIGHILSVTDVPTTAAFLDNMKDMGYKFAFKGGLSFSL
GDIRIPEQKTKLIADAREQVEGISANYNMGLITNNERYNQVIDVWTSTNAQLTEAAMKNI
REDQQGFNSVYMMLDSGARGSKEQIRQLTGMRGLMAKPKKSTAGGGEIIENPILSNFKEG
LSILEYFISTHGARKGLADTALKTADAGYLTRRLHDVSQDVIVNLDDCGTLRGVEVSALK
KNEEIVETLGERILGRVALQDVVNPLDNEILVAAGQEITETIVKAIEASPIEKVEVRSPL
TCEALKGICAKCYGRNLATGKMTQRGEAVGVIAAQSIGEPGTQLTLRTFHVGGVAGGISE
ESSIVARFPGKLEIEDLKTVKGEDNEGNAVDIVVSRSTELKLVDEKTGILLSTNNIPYGS
SIFVKDGQSVAKGEVICKWDPYNGVIVSEFTGKIAYEDLEQGQTYMVEIDEQTGFQEKVI
SEARNKKLIPTLLVYGKDNELIRSYNLPVGAHLMVDDGEKIKAGKVLVKIPRRSSKSGDI
TGGLPRITELLEARNPSNPAVVSEIDGVVSFGKIKRGNREIIIESKFGEVKKYLVKLSSQ
ILVQENDFVRAGAPLSDGAITPDDILRIQGPAAVQQYLVNEIQEVYRLQGVKINDKHFEV
VIRQMMRKVQVQDPGDTLFLEDQLIHTKDFILENDKLYGMKVVEDAGDSEVLKPGQIITP
RQLRDENSLLKRTDKNLVVARDVITATATPVLQGITRASLQTKSFISAASFQETTKVLNE
AAVAGKVDNLEGLKENVIVGHRIPAGTGMREYDHTIVGSKEDYNEMMANKEEYIY
NT seq
4308 nt
NT seq
+upstream
nt +downstream
nt
atgatgaataatagaaataacaaagacaaaaaccaagttaaaaggtttgacaagatttcg
ataggacttgcttctcctgaatctattttaaaagaatcaagaggtgaagtattaaagcct
gaaactatcaactacagaacgcacaaaccagagcgtgacggtcttttctgcgaaagaatt
ttcggtcctgttaaggattttgaatgtgcttgtggaaaatacaaaagaattcgttacaaa
ggaattatttgtgaccgttgtggtgtagaagttaccgagaaaaaagtacgtagagataga
gtaggacacatcaaccttgtggtgccaattgctcatatttggtatttccgttctcttcca
aacaaaattggatacatccttggattgccatctaagaaattagatatgattatttactac
gaaagatacgtagtaatccaagcaggtattgctaaaaatgctgaaggagaaccattacaa
agattagatttcttgacagaagaagagtatttgaatattttagatacacttccagctgac
aatcaatatttagacgattttgatccaaataaatttgttgccaaaatgggagcagagtgt
attatggatttattagcacgtatcgacttagatgaattatcatacagtttacgtcatagt
gcgaataatgaaacctctaaacaacgtaaaacagaagctttaaaaagattacaagtagta
gagtctttccgtgagtctaacttgaaccgcgagaatcgtcctgagtggatgattatgaaa
gtagttcctgttattccaccagaattacgtccgcttgtgccactagatggaggtcgtttt
gcaacttctgatttgaatgatttataccgtcgtgtaattatacgtaacaaccgtttgaaa
agattgatggagatcaaagctcctgaagtaatcttgagaaacgaaaaacgtatgttacaa
gaatctgtagattcacttttcgataatactcgtaaagcttctgcggttaaaacagaatca
aacagaccattaaaatcattatcggattcattaaaaggtaaacaaggacgtttccgtcaa
aacttacttggaaaacgtgtagattattctgctcgttcagtaattgttgttggacctgag
ttgaaattattcgaatgtggtatcccaaaagatatggcatctgaattatacaaacctttt
gtaatccgtaaattgattgaaagaggaattgtaaaaacggttaaatctgctaaaaaaata
attgacaaaaaagagccagtagtttgggacatccttgaaaacgtaattaaaggacaccca
gtattactgaaccgtgctcctactttgcaccgtttaggtatccaagcgttccaaccaaaa
ttaattgaaggaaaagcaatccaattacaccctttagtgtgtacggcattcaacgcggat
tttgatggtgaccagatggcggttcacttgccattaggaccagaggcaattttggaagca
caattattaatgttggcttctcacaatattttgaaccctgctaatggagcgcctatcacg
gtaccttctcaagacatggttttgggtctatattatatgaccaaagagcgtttatcaact
cctgagcataaaattttaggtcaagatttgactttctattctgctgaagaggtaaacatt
gcattaaacgaaggacgattagaattgaatgctcgtgtaaaaattagagcaaaagatttt
aatgaaaatggagagttggtttacaaaataatccaaactactgcaggtcgtgtattgttt
aatgaagtagttcctgaagctgctggatatatcaatgatgtattaactaagaaaaactta
agagatattattggtcacattttaagtgttactgatgtgcctacaacagctgctttctta
gataatatgaaagatatgggatacaaatttgccttcaaaggtggtttgtcattctcatta
ggtgatattagaattccagagcaaaaaactaaattaattgcagatgctagagagcaagtt
gaaggtatttctgctaactataacatgggtcttatcaccaataacgaacgttataaccaa
gttattgatgtgtggacatctactaatgctcaattaacagaggcagcaatgaaaaacatt
agagaagaccaacaaggttttaactcagtgtacatgatgcttgattctggagcaagggga
tctaaagaacaaatccgtcagttaactggtatgcgtggtttgatggctaagcctaaaaaa
tcgactgctggtggtggtgagattattgaaaacccgattttgtctaactttaaagaaggt
ctttctatccttgagtattttatttctactcacggtgctcgtaaaggtcttgcagatacg
gctcttaaaactgcggatgcagggtatttaacaagaagattacatgatgtttctcaggat
gttattgttaatcttgatgattgtggaacattgagaggtgttgaagtttcggctttaaag
aaaaacgaagaaatagtagaaactttaggagaaagaatccttggacgtgtagcattacaa
gatgttgtaaatccattagataatgaaattctagttgctgcaggacaagaaataacagaa
acaattgtaaaagcaattgaagcttctccgattgaaaaagtagaggttcgttctccatta
acttgtgaggcattaaaaggaatttgtgctaaatgttatggtagaaacttagctactgga
aaaatgactcaaagaggtgaagcagtaggagttattgctgcacaatctattggagagcct
ggtacacagttaacacttcgtaccttccacgttggaggggtagcaggaggtatttctgaa
gaatcaagcattgttgctcgtttcccaggaaaactagaaatcgaagatttaaaaacagtt
aaaggagaagataatgaaggaaacgcagtggatattgttgtttctcgttctactgaattg
aaattagtcgatgaaaaaacaggtattttattaagtacaaataatatcccttacggttca
agtatttttgtaaaagacggtcagtctgttgcaaaaggagaggtaatctgtaaatgggat
ccatataatggagttattgtttctgagtttactggtaaaattgcttacgaagatttagaa
caaggtcaaacttatatggttgaaatcgacgaacaaactggtttccaagaaaaagttatt
tctgaagcaagaaacaaaaaattaattcctactttattagtatatggtaaagacaatgaa
ttaattcgttcgtataacttaccagtaggagcccacttgatggttgacgatggtgagaaa
attaaagcaggtaaagtattggtgaaaattcctcgtcgttcttctaaatcaggagatatc
acaggaggtttaccaagaattacagagttgttagaagctcgtaatccttcaaacccagct
gtagtttcagaaatcgacggagttgtttctttcggaaaaatcaaacgtggtaatcgtgaa
atcatcattgagtctaaatttggtgaagtgaagaagtacttggtaaaattatcaagtcaa
attttagttcaagaaaacgactttgtacgtgctggagctccactttcagatggtgccatt
acgccagatgatattttaagaattcaaggtccagcggctgttcaacagtacttggtgaac
gaaattcaagaagtataccgtttacaaggggttaaaattaacgacaaacactttgaggta
gtaattcgtcaaatgatgcgtaaagttcaagttcaagatccaggagatactttattctta
gaagatcaattgattcatactaaagattttatcttagaaaatgataagttatatggtatg
aaagtagttgaagatgctggagattcagaggtgttgaaaccaggacaaatcattacgcca
cgtcaattacgtgatgaaaattcattgttgaaacgtaccgataagaacttagttgttgct
cgtgatgtaattacagcaactgcaactccagtgttacaaggtatcacaagagcttctctt
caaacaaaatcattcatttctgcagcctctttccaagagactactaaagtattaaacgaa
gctgctgttgcaggtaaagtagataatttagaaggattgaaagaaaatgtaattgtaggt
cacagaatccctgcaggtacaggtatgagagaatacgatcacacgattgtaggatctaaa
gaagactacaatgaaatgatggctaacaaagaagagtatatatattaa
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