Flavobacterium keumense: MG292_02935
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Entry
MG292_02935 CDS
T09003
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
fke
Flavobacterium keumense
Pathway
fke03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fke00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MG292_02935 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fke03019
]
MG292_02935 (rnr)
03016 Transfer RNA biogenesis [BR:
fke03016
]
MG292_02935 (rnr)
Enzymes [BR:
fke01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
MG292_02935 (rnr)
Messenger RNA biogenesis [BR:
fke03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
MG292_02935 (rnr)
Transfer RNA biogenesis [BR:
fke03016
]
Prokaryotic type
tRNA degradation factors
MG292_02935 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
OB_Dis3
OB_RNR_1st
S1
OB_HELZ2
HTH_11
Peptidase_C92
DUF5604
DUF7430
Motif
Other DBs
NCBI-ProteinID:
WGK95202
UniProt:
A0ABY8NAE9
LinkDB
All DBs
Position
complement(676328..678508)
Genome browser
AA seq
726 aa
AA seq
DB search
MGKRLRKPLKKEKTYSEKIVKILSQNANKVFNYKQIAAKLDLDDTQSRNQIIKDLKILAA
KKTIIESEPGKYLIKAVSQDYYEGTIDMTSRKTAYFICPDLEEDVFIPTNNLNRALDKDT
VKVYVYNRRKGRRPEGEVIEVIERNKTDFVGVIDIQKNFSFVATANPKMYTDIFIPKDKI
GEAEQGDVVLVHIEDWPKRADSPFGKVIKVLGKPGEHDTEIHAILAEYGLPSEFPIEVET
YAQKIDTTIHESEIAKRRDMRDTLTFTIDPKDAKDFDDALSFKKLENGNYEIGIHIADVS
FYLEEGTILDDEAYQRATSVYLVDRVVPMLPEVLSNYACSLRPHEEKYTFSAVFEINEKA
QVVNQWFGRTVIFSDQRFAYEEAQYIIETKEHTIPQEISITGAPYQVSKEIVDATLKLDA
LAKILRRNRMNEGAISFDKVEVKFNLDQEGEPAGVYFKISKDANHLIEEFMLLANRKVAE
FIGKQKKTFVYRIHDEPNEDKLIAMQTVIAKFGYKIDFRNKGDISKSLNNLLSEVVGKKE
QNLIDTLTIRSMSKAKYSTDNIGHYGLAFDYYSHFTSPIRRYPDVMVHRLLQYYLDGGKS
VDEETYESKCLHSSTMEGLATNAERDSIKYMQVKYMQNHQDQEFLGVISGVTEWGIYVEI
IENKCEGMVRIRDIKEDYYTFDEKQYALVGATSHGLLQLGDEIFVKVKNADLVKKQLDFH
FIRRNE
NT seq
2181 nt
NT seq
+upstream
nt +downstream
nt
atgggaaagcgtttaagaaaaccgctcaaaaaagagaagacttactctgaaaaaattgta
aaaatactgtctcaaaatgctaataaagtatttaattacaagcaaatagccgctaaatta
gatttagacgatactcaaagtagaaatcaaattataaaagatttaaaaattttagcagct
aaaaaaacaattatcgaatcagaacctggaaaatatttaattaaggcggttagtcaagat
tattacgaaggtacaattgatatgaccagccgtaaaactgcttattttatttgtccagat
ttagaagaagatgtttttattccaactaataatttaaatagagctttagataaggatacg
gtaaaagtgtatgtttataaccgtagaaaaggacgtcgaccagaaggagaagtgattgaa
gtaattgaacgaaataaaaccgattttgttggggttattgatattcaaaaaaacttttct
tttgttgctactgccaatccaaaaatgtacactgatatttttattccaaaagacaaaata
ggagaggcggagcaaggtgatgtggtgttggttcatattgaagattggcctaaaagagcc
gatagtccttttggaaaagtaataaaagtgcttggaaaaccaggagaacatgatacagaa
attcacgctattttagctgaatatggtttaccgtctgaatttcctattgaagtagaaacc
tatgcgcaaaaaatagacactacaattcacgaaagcgaaatagccaagcgtcgggatatg
cgcgatactttaacttttactatcgatccaaaagacgctaaagattttgatgatgcgttg
tctttcaaaaagttagagaatggaaattatgaaattggaattcatattgccgatgtttct
ttttatttagaagaaggtactattttagatgacgaagcttatcaaagagctacttcggta
tatttagtagatcgagtagtaccaatgcttcctgaagtattgtcaaattatgcttgttct
ttacgtccacacgaagaaaaatacactttttctgcggtatttgaaatcaatgaaaaagcg
caagtagttaatcaatggtttggaagaactgtaattttttctgaccaacgttttgcttac
gaagaagcccaatatattattgaaaccaaagagcatactattccgcaagaaatctcgatt
acaggcgcaccgtatcaagtttcaaaggaaattgttgatgctacactgaaattagatgca
ttggctaaaattttgcgtagaaatagaatgaatgaaggcgctatttcttttgataaagtg
gaagtaaaattcaacttagatcaagaaggagaacctgctggagtgtatttcaaaatctcc
aaagatgctaatcatttgattgaagaattcatgcttttagccaatagaaaagtggctgaa
tttattggtaaacaaaagaaaactttcgtataccgtattcacgatgagcctaatgaagat
aaattaattgcaatgcaaactgttattgctaagtttggctataaaatcgactttagaaac
aaaggtgatatctctaaatcgttgaataatttattgagtgaagttgtaggtaaaaaagag
caaaacttaattgatactttaactattcgtagtatgagtaaagcaaaatattctacggat
aatattggtcattacggattagcttttgattattattcccattttacttcacctattcgt
aggtatccagatgtaatggtgcatcgtttgttgcagtattatttagatggtggaaaatca
gtagatgaagaaacttacgaatccaaatgtttacattcgtctactatggaaggtttagct
acgaatgcagagcgagattctattaaatacatgcaggttaaatacatgcaaaatcaccaa
gatcaagagtttttaggggtaatttctggagtaaccgaatggggtatttatgtcgaaatt
atcgaaaataaatgcgaaggtatggttcgaattagagatattaaagaggattattatact
tttgacgaaaaacaatacgctttagttggtgctacttctcatggtttattacaactagga
gatgagatttttgtaaaagttaaaaatgccgatttagttaaaaaacaattggattttcac
tttatcagaagaaacgaataa
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