Flavobacterium keumense: MG292_06075
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Entry
MG292_06075 CDS
T09003
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
fke
Flavobacterium keumense
Pathway
fke03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fke00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MG292_06075
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fke03019
]
MG292_06075
03009 Ribosome biogenesis [BR:
fke03009
]
MG292_06075
Enzymes [BR:
fke01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
MG292_06075
Messenger RNA biogenesis [BR:
fke03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
MG292_06075
Ribosome biogenesis [BR:
fke03009
]
Prokaryotic type
rRNA helicases
MG292_06075
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
AAA_22
NOGCT
Motif
Other DBs
NCBI-ProteinID:
WGK93664
LinkDB
All DBs
Position
complement(1383312..1385162)
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AA seq
616 aa
AA seq
DB search
MNKFEQLGLNESLLLAIKDLGFENPSEVQEKAIPVLLEQNTDLVALAQTGTGKTAAFGFP
LIQKIDAEDRSTQALILSPTRELCLQITNEIKQYSKYVKGLHTVAVYGGASITEQAREIK
RGAQIIVATPGRMQDMINRGLVNIKNINFCILDEADEMLNMGFYEDIVSILSDTPDEKNT
WLFSATMPAEVARIAKKFMADPAEITVGHKNSGSATVSHEFYLVNARDRYEALKRLADAN
PDIFSVVFCRTKRDTQAVAEKLIEDGYSAAALHGDLSQAQRDGVMKSFRGRQIQMLVATD
VAARGIDVDNVTHVVNYQLPDEIETYNHRSGRTGRAGKLGTSIVIVTKSELRKISSIERI
IKQKFEEKTIPSGIEICEIQLLHLANKIKDTEVDHEIDNYLPAINEVLEGLSKEELIKKM
VSVEFNRFINYYKKNRDLSTQSAGSDRRERDGASREHNNGGATRYFINIGARDDFDWMQL
KDFLKETLELGRDDVFKVDVKEGFSFFNTDAEHTDKVMEVLNGYNLNGRRINVEISKNDG
GGRRDHNGRNSGGFGGRSSGPRREGNFAPRREGGFRSERGSAPRRGEGRESRVSERAPRR
SESFGDSSRPRRSRRD
NT seq
1851 nt
NT seq
+upstream
nt +downstream
nt
atgaacaaatttgaacaattaggtctgaatgagtcgctactgctggcgatcaaagatcta
ggatttgagaatccgtcagaagtgcaagaaaaagcgattccagtactattggaacaaaac
acagacttagtagctttagcacaaacaggtacagggaaaacggcagctttcggttttccg
cttattcaaaaaattgatgctgaagacagaagtacgcaagcgttaattttatcaccaacg
cgtgagctatgcttacaaatcaccaacgagattaaacaatactcaaaatacgtaaaaggg
ttacacacagtggcagtttatggtggtgcaagcattacagaacaagcccgagaaattaaa
cgtggagcacaaattattgtggctactccaggtagaatgcaagacatgattaatagaggt
cttgtaaacattaaaaacatcaatttctgtattcttgacgaagcagatgagatgttgaac
atgggcttttatgaagacatcgtatcgattttatccgatactccagatgagaaaaacact
tggttattctccgcaacaatgccggctgaagtagcgcgaattgctaaaaaattcatggca
gatcctgctgaaatcactgttggacacaaaaattcaggatcagctacggtatctcacgaa
ttttacttagttaatgctcgtgatcgttacgaagcattaaaacgtttggccgatgctaat
ccagacatcttttcggttgttttttgtagaaccaagcgtgatacacaagctgtggctgaa
aaattaattgaagatggatatagtgctgctgcgctacacggagatttatctcaagcacaa
cgtgatggcgtaatgaaatcgtttagagggcgccaaattcaaatgttagtagctaccgat
gtagctgctcgtggaattgatgtggacaacgtaacccacgtagtcaactatcaattgcct
gacgaaatcgaaacctataaccaccgttctgggcgtactgggcgtgcgggaaaattagga
acttcgattgttattgtaacgaaaagtgaattgcgtaagatttcttctatcgaaagaatc
atcaaacaaaaatttgaagaaaaaactattccttctggaattgaaatctgcgaaatccaa
ttattacatttagcaaacaaaatcaaagataccgaagtagatcacgaaattgacaactac
cttccggctatcaacgaagttctagaaggattatctaaagaagagttaatcaaaaaaatg
gtatcggtagaatttaatcgtttcattaactactacaagaaaaatcgagacctttctaca
caatctgctggttcagaccgaagagaaagagatggagcttcaagagaacataacaatggt
ggagctactcgttattttataaacattggtgcaagagatgattttgattggatgcaattg
aaagatttcttgaaagaaactttagagctaggtcgtgatgatgttttcaaagtagatgta
aaagaaggattctctttctttaataccgatgctgaacatacagataaagtgatggaagta
cttaacggatacaacttaaacggaagacgaatcaatgtagaaatctctaaaaatgatggt
ggcggaagacgtgatcacaatggtagaaattcaggtggatttggcggcagaagttcgggt
ccaagaagagaaggaaactttgctccaagacgtgaaggaggatttagaagcgaaagaggt
tcggctccaagaagaggagaaggaagagaaagcagagtttctgaaagagcaccaagacgt
tctgaaagctttggcgattcgtcaagaccaagaagatcaagaagagattaa
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