Flavobacterium keumense: MG292_09595
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Entry
MG292_09595 CDS
T09003
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
fke
Flavobacterium keumense
Pathway
fke03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fke00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MG292_09595
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fke03019
]
MG292_09595
Enzymes [BR:
fke01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
MG292_09595
Messenger RNA biogenesis [BR:
fke03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
MG292_09595
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
AAA_19
P-loop_SecA
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
WGK94324
UniProt:
A0ABY8N4L6
LinkDB
All DBs
Position
2121453..2122706
Genome browser
AA seq
417 aa
AA seq
DB search
MLFEELSLSKSIQKAVYEEGYTQPTPIQEQAIPYILEGKDVIGCAQTGTGKTAAFAIPII
HQLHRIVGSSKKSKQIRALIVTPTRELAIQIGQNFDTYAKYTNLTQTTIFGGVSQIPQVD
VLKKGIDVVISTPGRLLDLHKQGFINFDYLHTLVLDEADQMLDMGFINDVKKIVKLTPNN
RQTLLFSATMPMAIRELAELFLKNPARVEVAPISSTAEKVKQRIYFVEKSEKRNLLYHLI
RNEKLSDVLVFTRTKHGADNVVKSLRKKGIAAEAIHGDKSQSARQRVLESFKNKEVNILV
ATDIAARGIDIDQLPLVINFDLPNIPETYVHRIGRTGRAGHEGIALSFCSKDEHPYWKDI
QRLIRVDVKTITEHPYPWHTDRPDGSIETITPSTKRSGKNQKSRKSNTSKKNKKRWY
NT seq
1254 nt
NT seq
+upstream
nt +downstream
nt
atgttattcgaagaattatcactttcaaaaagtattcaaaaagccgtttatgaagaaggc
tatacgcaacccactcctatccaagaacaagcaattccatatattttagaaggcaaagat
gtaattggttgtgcacaaactgggacaggaaaaacagctgcatttgcgattcccatcatt
caccaactgcatcgaatagtaggttcttcaaaaaaaagcaaacaaattagagctttaatt
gttaccccaacccgagagttagcgatacaaattgggcaaaattttgacacttatgccaaa
tatacgaatctaactcaaaccactatttttggtggtgtatctcaaattccacaagttgat
gtactaaaaaaaggaattgatgtagtaataagtactcctggacgtttactcgatttacat
aaacaaggatttatcaatttcgattatctacatacactagtcctagatgaagctgatcaa
atgctcgacatgggattcattaatgatgtaaaaaaaattgtaaaattaaccccaaacaac
agacaaacattgttgttttcggccactatgccaatggctattagagaattagccgaacta
tttttaaaaaatcctgccagagtagaagtcgcacctatttcttctactgcagagaaagtc
aaacaacgtatttactttgttgaaaaaagtgaaaaaagaaacttactgtatcacttaatc
cgaaatgaaaagctatctgatgtattagtttttacaagaactaaacacggagcagacaat
gttgtaaaatctttacgaaaaaaaggcatcgctgctgaagctatccatggagataaatct
caaagtgcaagacaacgtgtattggaatcttttaaaaataaagaagtaaatattcttgtt
gctacagacattgctgcccgtggaattgacattgatcaactccccttagtaattaatttc
gatttaccaaatattccagaaacatacgttcaccgaattggaagaacgggtcgtgctgga
catgaaggaattgcactttctttttgtagcaaagatgagcatccctattggaaagatatc
caaagattaattagagttgatgtaaaaactattactgagcatccctatccttggcacact
gacagacctgatggaagtatagaaacaataactccatctactaagcgcagtggaaaaaat
caaaaatcaagaaaatctaacacttctaaaaaaaataaaaaacgctggtattaa
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