Flavobacterium kingsejongi: FK004_09785
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Entry
FK004_09785 CDS
T05683
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
fki
Flavobacterium kingsejongi
Brite
KEGG Orthology (KO) [BR:
fki00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
fki03016
]
FK004_09785
Enzymes [BR:
fki01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
FK004_09785
Transfer RNA biogenesis [BR:
fki03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
FK004_09785
Prokaryotic type
tRNA splicing ligases
FK004_09785
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
AWG25505
UniProt:
A0A2S1LP23
LinkDB
All DBs
Position
2214766..2216157
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AA seq
463 aa
AA seq
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MGNKLSGRDLIKLGFPKNNSINIALGQISRYRKREKKERIIAEAKDVLLHPENYKNDGTW
GKVAEGLVNPVQMRMHQLNTTRAPFTIYGENEIDQQAKFQLYDALKLPISVAGALMPDAH
SGYGLPIGGVLATDNAVIPYGVGVDIGCRMSLSIFDLPESYSKGRELQLEAILKDHTKFG
MYEAHAVKADHEIFSRAAFQDIPLLKGLLGKAYKQLGTSGGGNHFVEFGVAKIDYPLAEW
KLEAGSYFCVLSHSGSRGMGAAIAKHYTYLATKQCPLPKNVQHLAWLDLNTHDGQEYWLA
MNLAGDYAKACHEDIHRRIAKALGKRIVVTIENHHNFAWKEMVNGKECIVHRKGATPAHE
GALGIIPGSMTAPGFIVLGKGNPDALHSASHGAGRLYSRSKCKSMFTHGEIKKVLKAHDV
HLIGGNVDEAPMAYKNIQAVMGHQEGLVSVLGTFTPKIVRMDR
NT seq
1392 nt
NT seq
+upstream
nt +downstream
nt
atgggaaataaattatccggaagagacctgattaaattgggctttccaaagaataatagt
atcaatatagccttagggcaaatcagccgatatcggaaaagagaaaaaaaggaaagaatt
attgcagaggcaaaagatgttttgctgcatcctgaaaactataaaaatgacggaacctgg
gggaaagtagcggaaggattggtaaatccggtacaaatgcgcatgcaccagctgaatacc
acccgcgcaccatttactatttatggtgaaaatgaaattgaccaacaggcaaaattccag
ttgtacgatgccctgaagctgcctatttcggtcgcaggtgccctgatgcccgatgcacat
tcgggctatgggttaccgattggtggcgttttggcaaccgataatgccgtaatcccttat
ggggtaggagtagacatcgggtgtcgtatgagcctctccatttttgatttaccggaatcc
tatagcaaagggcgggaacttcaactggaagcgatcttaaaagaccataccaaatttggg
atgtatgaggcacatgcggttaaagcagatcatgaaattttcagccgggcagcattccag
gatattccattgctaaagggattgttaggcaaggcctataaacagctgggaacttcagga
ggcggcaaccactttgtagaatttggagtggccaaaatcgactatccgttagcagaatgg
aaactggaggcaggaagttatttttgtgtgttatcccacagtggatcgcgtggaatggga
gccgcgattgcgaaacattatacgtatctggcaaccaaacaatgcccgttacctaaaaat
gtacaacatctcgcctggctggatctcaatacacatgacggtcaggaatactggttggcg
atgaatcttgccggggattatgcgaaggcatgccacgaggatatccaccgtagaattgca
aaagcattgggcaaacgtatcgttgtgacgattgagaaccatcacaattttgcctggaaa
gaaatggtcaatggcaaagaatgtatcgtgcatcgcaaaggggcaacaccagcccatgag
ggagcattgggaatcattccgggatcaatgaccgctccgggatttattgtgttgggaaaa
ggaaatcccgatgcattacactcggcttcacatggtgcgggacgattgtattcccgatcc
aaatgcaagagcatgtttacccatggcgaaataaaaaaagtactgaaagctcatgatgta
cacctgattggaggcaatgtcgatgaggcacccatggcttataaaaatattcaggctgta
atgggacatcaggaggggttagtaagcgtattggggacatttacccccaaaattgtccga
atggaccgataa
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