Flavobacterium kingsejongi: FK004_13695
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Entry
FK004_13695 CDS
T05683
Name
(GenBank) RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
fki
Flavobacterium kingsejongi
Pathway
fki03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fki00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FK004_13695
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fki03019
]
FK004_13695
Enzymes [BR:
fki01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
FK004_13695
Messenger RNA biogenesis [BR:
fki03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FK004_13695
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Cas3-like_C_2
Hydrolase
HEM4
P-loop_SecA
ERCC3_RAD25_C
UvrD_C
CMS1
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
AWG26206
UniProt:
A0A2S1LRE1
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All DBs
Position
complement(3016314..3017573)
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AA seq
419 aa
AA seq
DB search
MKFEDLSLNKSIQRALIDEGYNTPTPIQQQAIPIILKGTDLIGCAQTGTGKTAAFAIPII
NHLHHMVGSSKKAKQIRALIVTPTRELAIQIGESFDAYGKYTNLVQLTIFGGVSQVPQVD
KLKKGVDVLIATPGRLLDLHKQGFIDLDQLHFLVLDEADQMLDMGFINDVKKIVKLTPSN
RQTLLFSATMPMAIRELADAFLKSPEYVTVSPVSSTAETVEQRVYFVEKENKRQLLYHLI
KNDDLSDVLVFTRTKHGADNVVKALKKNGINAEAIHGDKSQNARQRALEHFKTKEVGVLV
ATDIAARGIDIDQLPFVINFDLPNIPETYVHRIGRTGRAGNGGIAISFCSKDEKAYWSDI
QKLIKVNVKTIEDHPYPWAEGSGGGSATTEKKQGNSNRGGERTKSRKSDASKQNKKRWY
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgaaattcgaagatttatcattaaataaaagtattcaaagagccctcattgacgaaggc
tataacacacccacgccgatacagcaacaggctatcccgatcatattgaaaggaactgac
ctcattggctgtgcacagaccggaaccggtaaaacggctgcttttgcaatcccgatcatc
aatcatttgcatcatatggtagggtcatccaaaaaagcaaaacaaatccgtgccctgatt
gtaactccaacccgggaacttgccatacaaattggagaaagttttgatgcttatggaaaa
tatactaacctggtacaacttactatttttggtggtgtatcacaggtgccgcaggtagac
aaattaaaaaaaggagtcgatgtgcttatcgctactccgggaagattactggatttacac
aagcagggatttattgatcttgatcaattgcactttcttgtactggatgaagcagatcaa
atgctggatatgggattcatcaacgatgtgaaaaaaatcgtcaaactgaccccgtccaac
cgacaaaccttattgttttctgctacaatgcctatggcgatccgggaactggcagatgcc
ttcctgaaatctccggaatatgttaccgtatctcctgtctcttccacagcagaaactgta
gaacaacgcgtttattttgttgaaaaagaaaataaaaggcaattactgtatcacctgatc
aaaaatgacgatttatccgatgtattggtttttacaagaaccaagcacggtgctgataat
gttgtaaaagccctgaagaaaaacggaatcaatgccgaagcaattcacggtgacaaatcc
caaaatgccagacaaagggcattggagcattttaaaacgaaagaagtcggtgtactggta
gctacggatattgctgcccgtggtatcgatatagaccagttaccttttgtaatcaatttc
gaccttcccaatatccctgaaacgtatgtacatcgtattggtagaaccggacgtgctgga
aatggtggaatcgcaatttctttttgcagtaaagatgaaaaggcctactggtccgatatc
caaaagcttattaaagtgaatgtaaaaacgatagaagaccatccttatccatgggcggaa
ggaagtggcggcggaagtgcaaccacagaaaaaaaacaaggcaattccaaccgtggcgga
gaacgtactaaatcacgaaaatcggatgcttcaaaacaaaacaaaaaacgctggtattaa
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