Flavobacterium kingsejongi: FK004_17380
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Entry
FK004_17380 CDS
T05683
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
fki
Flavobacterium kingsejongi
Brite
KEGG Orthology (KO) [BR:
fki00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
fki03016
]
FK004_17380
Enzymes [BR:
fki01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
FK004_17380
Transfer RNA biogenesis [BR:
fki03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
FK004_17380
Prokaryotic type
tRNA splicing ligases
FK004_17380
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
LeuA_dimer
Motif
Other DBs
NCBI-ProteinID:
AWG26874
UniProt:
A0A2S1LT27
LinkDB
All DBs
Position
complement(3825453..3826877)
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AA seq
474 aa
AA seq
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MKNTVSGTDFMAVGYEQNKILGTAIEIANMHFEALPVKEKIELFQKVVENPAHFLADAVI
APLASQLIESAKMPQDETIALREEIQDYAVYGADQIVAGARDQMDVAMRLPVTVGGALMP
DAHQGYGLPIGGVLATKNAIMPYGVGVDIGCRMALSIYDVPETYFEQNRAKYQRELIAHT
KFGAGRGFHGQYKSGHEVMDRNTFDLTPLMKKLKDKAWSQLGSSGGGNHFVEFGIIEFSE
RDEVLNINKGRYVALLTHSGSRGFGATIAGHYTQLAKQKTKLPKEAVNLAYLDMNTQEGQ
EYWIAMNLAGDYASACHEVIHEKLTRAIGGVVLAKVENHHNFAWKEIWNGEEVIVHRKGA
TPAGKGVMGIIPGSMTAPGFLVRGKGTENAINSASHGAGRLMSRTQAIKSITKSEMRQQL
KDHNVTLIGAGKDEAPMAYKDIHQVMASQKNLVDIVAQFTPKIVRMADDGSRED
NT seq
1425 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaatacagtatcaggaacggattttatggccgttggttatgagcaaaataaaatt
ttaggaactgcaattgaaattgccaatatgcattttgaagcacttccagtaaaagaaaaa
atagaattattccaaaaagtagtagaaaatccggcgcattttttagcagatgctgttata
gcgccactggcttctcagttgattgaaagtgctaaaatgccacaggatgaaactattgct
ttgcgggaagagatccaggattatgcagtatatggagcagatcagattgtagcgggagcc
agagatcagatggatgttgcaatgcggcttccggtaaccgtgggtggagcattgatgccc
gatgctcaccagggatatggattgccgataggtggggtgctggcaactaaaaatgctatc
atgccgtatggggtaggagtggatattggatgtagaatggcgctatcgatttatgatgta
ccggaaacttattttgagcaaaaccgggcaaaataccaacgggaattaattgcacatacg
aaatttggtgcagggcgtggcttccatgggcagtataaatcggggcatgaagtgatggat
cggaatacatttgacctgacacccctgatgaagaaattgaaagataaagcctggtcacaa
ttgggatcttccggaggcgggaatcattttgttgaatttggaattatcgaattcagtgaa
agagatgaggtgcttaatattaacaaaggacgctatgtcgctttattgacacattctggt
tccaggggatttggcgctactatcgccggacattatacccaattggcaaagcaaaagaca
aaattacccaaagaggctgtaaatcttgcttatctggatatgaatacgcaggaaggtcag
gaatactggattgcaatgaatttagcaggagattatgcttcggcctgtcatgaagtaatc
catgagaaattaacccgtgccattggtggagtcgttttggctaaagttgaaaatcatcat
aattttgcatggaaggaaatctggaatggggaagaagtgatcgtacatcgtaaaggagct
acgcctgcaggtaaaggtgtgatgggaatcattccgggatcgatgacggctcctgggttt
ttagtgcgggggaaagggacagaaaatgctattaattccgcttcccatggtgccggtagg
ctgatgagccgtacacaggcgattaagagtatcacaaaatcagaaatgaggcagcagcta
aaagatcataatgttacgctaatcggtgcaggaaaagatgaagcccctatggcgtataaa
gatattcatcaggtcatggcttcacaaaaaaacctggttgacatagtagctcaatttaca
ccaaaaatagtccgtatggcggatgatggaagtcgggaagattaa
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