Flavobacterium kingsejongi: FK004_18315
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Entry
FK004_18315 CDS
T05683
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
fki
Flavobacterium kingsejongi
Pathway
fki03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fki00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FK004_18315
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fki03019
]
FK004_18315
03009 Ribosome biogenesis [BR:
fki03009
]
FK004_18315
Enzymes [BR:
fki01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
FK004_18315
Messenger RNA biogenesis [BR:
fki03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FK004_18315
Ribosome biogenesis [BR:
fki03009
]
Prokaryotic type
rRNA helicases
FK004_18315
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
RecG_N
AAA_22
GTP_cyclohydro2
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AWG27046
UniProt:
A0A2S1LTT7
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All DBs
Position
4030147..4032021
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AA seq
624 aa
AA seq
DB search
MNKFEQLGLNESLLMAIKDLGFENPSEVQEKAIPLLLEQNTDIVALAQTGTGKTAAFGFP
LIQKIDANNRNTQALILSPTRELCLQITNEIKQYSKYVKGLNTVAVYGGASITEQAREVK
RGAQIIVATPGRMQDMINRGLVNITQLEFCILDEADEMLNMGFYEDIVSILSTTPDEKNT
WLFSATMPQEVARIAKEFMRTPQEITVGHKNAGSATVSHEFYLVNARDRYEALKRLADAN
PDIFSVVFCRTKRDTQAVAEKLIEDGYNAAALHGDLSQAQRDGVMKSFRGRQIQMLVATD
VAARGIDVDNITHVVNYQLPDEIETYNHRSGRTGRAGKLGTSIVIITKSELRKISSIERI
IKQKFEEKTIPSGIEICEIQLLHLANKIKDVEVDHEIDNYLPAINNVLEDLTKEELIKKM
VSVEFNRFINYYKKTRDLSSQSAGERRESDGAPRENNNGAVRYFVNIGSRDNFDWMSLKD
YLKETLDLGRDDVFKVDVKEGFSFFNTDAEHSDKVMEILNNVQLEGRRINVEISKNDGGG
RRDHNGRSSSGGSRGGFNRGGGERSGGFGSRSSSAPRGDRGGSREGGFGSRSSSAPRNEG
GFSDRSSRRSEGFGGSAPKRPRKS
NT seq
1875 nt
NT seq
+upstream
nt +downstream
nt
atgaataaatttgaacaattaggattgaatgaatcgcttctgatggcgataaaagatcta
ggatttgagaatccgtcggaagtacaggaaaaagcgattcccctattattggagcaaaac
acagacattgtagcattggcgcagaccggtacagggaaaactgcagcgtttggttttcca
ctgattcagaaaattgatgctaacaacagaaacacacaggcattaattttatcaccaaca
cgcgaactttgtttacaaatcacaaatgagattaaacaatattcaaaatacgttaagggc
ttaaacactgtagcagtctatggtggagcaagcatcacagaacaggcgcgtgaggtaaaa
agaggagcacaaattattgttgctactccggggagaatgcaagacatgatcaacagagga
ctggttaatattacacaactggaattctgtattcttgacgaagcagatgaaatgctgaac
atgggattctatgaggatatcgtttccattttgtctactactccagatgagaaaaacact
tggttgttttctgcaacaatgccacaagaggtagcaagaattgcaaaagagtttatgcgc
acaccgcaagaaattacggttgggcataaaaatgctggttctgcaacagtttcacacgaa
ttttacctagtaaacgctcgtgaccgttatgaagcactgaaacgtttggccgatgctaac
ccggatattttctccgtagttttctgtcgtaccaaaagagacacacaagctgtagcggaa
aaattgatcgaagacgggtataatgctgctgccttgcacggtgatttatcacaagctcaa
agagatggtgtaatgaagtcattccgtggtagacaaattcagatgcttgttgcgactgac
gttgcggcaaggggaattgatgttgacaatattactcacgtagtaaattaccaacttcct
gatgaaattgaaacgtacaaccaccgttctggtagaacaggtcgtgctggtaaattagga
acttctatcgtaattatcacgaaaagtgaattgcgtaagatttcttcaattgagcgaatc
atcaaacaaaaatttgaagaaaaaacaatcccttccggaattgaaatctgtgaaatacag
ttattgcacttagccaataaaattaaggatgtagaagtagatcacgaaatcgataactac
cttcctgctatcaataatgtgcttgaggacttaacgaaagaggaattgattaagaaaatg
gtatctgttgagttcaacagatttatcaactattacaaaaaaacaagagatctttcttct
caatctgctggagaaagacgcgaaagtgatggtgctccaagagagaacaacaatggtgcg
gttcgttattttgtaaatattggctcaagagacaattttgactggatgtctttaaaagac
tacctgaaagaaacattggatcttggtcgtgatgacgtgtttaaagtggatgtaaaagaa
ggattctcattcttcaatactgatgcagagcactctgataaagtcatggaaatcctaaac
aacgtacaattagaaggaagacgtatcaacgttgaaatttctaaaaatgacggtggcgga
agaagagaccataatggaagaagttcttctggaggttccagaggtggattcaaccgtggt
ggtggagaaagaagcggtggtttcggatccagaagcagcagtgcgccaagaggtgaccgt
ggcggaagccgtgaaggtggctttggctcaagatcatcctctgccccaagaaatgaaggc
ggtttctctgatagatcttcaagaagatctgaagggtttggtggatctgctccaaaacgt
ccaagaaaaagctaa
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