Flavobacterium kingsejongi: FK004_19035
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Entry
FK004_19035 CDS
T05683
Name
(GenBank) ribonuclease Y
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
fki
Flavobacterium kingsejongi
Pathway
fki03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fki00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FK004_19035
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fki03019
]
FK004_19035
Messenger RNA biogenesis [BR:
fki03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
FK004_19035
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
KH_KhpA-B
KH-I_KHDC4-BBP
DUF6550
KH_2
HTH_37
DUF4407
Motif
Other DBs
NCBI-ProteinID:
AWG27162
UniProt:
A0A2S1LU06
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All DBs
Position
4173499..4175064
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AA seq
521 aa
AA seq
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MDSTLLIVIATIVGICVGFGIAKMIEKSNVSNLIKNAKKEAASILKDAKADAETEKKHKI
LQAKEKFIELKSEHEQVILGRDKKIAEAEKRTRDKESQISNELAKTKKVNDEAEAKISEY
NKKSELLEIKQAEVDKMHKSQVEQLETIAGLSADDAKNQLIDSLKAEAKSNAMSYIQDTL
EEAKLTAQQEAKKIIINTIQRVGTEEAVENCVSVFNIESDDVKGRIIGREGRNIRAIEAA
TGVEIIVDDTPEAIILSCFDPVRREIARLALHKLVTDGRIHPARIEEVVAKTAKQIDDEI
IEVGKRTVIDLGIHGLHPELIKVVGRMKYRSSYGQNLLQHSREVAKLCGLMAAELGLNVK
LAKRAGLLHDIGKVPDTESDLPHAILGMQWAEKYGEKEEVCNAIGAHHDEIEMKSLLSPI
VQVCDAISGARPGARRQVLDSYIQRLKDLEDIAFGFNGVKNAYAIQAGRELRVIVESEKV
TDENAASLSFDISQKIQTEMTYPGQVKVTVIRETRAVNIAK
NT seq
1566 nt
NT seq
+upstream
nt +downstream
nt
atggatagtacattactaatagttatcgccacaattgttggcatctgcgttggtttcgga
atcgctaagatgatcgaaaaaagcaatgtttcaaatttgattaaaaatgcaaaaaaagaa
gctgcttcaattttgaaagatgctaaagccgacgctgaaactgaaaaaaaacataaaatt
cttcaggcaaaagaaaaattcatagagctaaaatcagaacacgaacaagttatcttagga
agagataaaaaaatagcagaagccgaaaaaagaacccgcgataaagaatctcaaatctca
aatgaattagccaaaaccaaaaaagtcaacgacgaagcggaagctaaaataagcgagtac
aataaaaaatcggaacttctggagatcaaacaggcagaagtagacaaaatgcacaaaagc
caggtagagcagttggaaaccattgccggcctgtctgcagacgatgctaaaaaccaattg
atcgacagcctaaaagcggaagccaaaagcaatgcgatgtcttacatccaggacacactg
gaagaagctaagcttactgcacaacaggaagcgaaaaagatcatcatcaacacaatccag
cgagtgggcactgaagaagcagtagaaaattgcgtttccgtattcaacattgaatccgat
gatgtaaaaggacgtattattggacgtgagggccgtaacatccgtgctatcgaagcagca
acaggcgttgaaatcattgttgatgatactcctgaagcgattatcctttcctgctttgac
ccggttcgaagagagattgcccgtcttgcgttacacaaattagtaactgatggccgtatc
cacccagcccgaattgaagaagtagtagctaaaacagccaaacaaatcgatgacgaaatc
atcgaagttggaaaacgtaccgtaattgacttaggaatacacggattacaccctgaatta
atcaaagttgtaggccgaatgaaataccgttcttcttacgggcaaaatttactacaacac
tccagagaagttgccaagctttgtggattgatggcagcagaattaggcctgaatgtaaaa
ctggctaaaagagctggtctgttacacgatattggtaaagttcctgatacggaaagtgac
ctccctcacgcaatccttgggatgcaatgggctgaaaaatatggtgaaaaagaagaagta
tgtaatgctattggagcccaccacgatgagatcgaaatgaaatcactactttctcctatc
gttcaggtgtgtgatgcaatctcaggtgcaagaccaggtgcaagacgccaggtactggat
tcttatatccaacgattaaaagacctggaagatattgctttcggttttaacggggtaaaa
aatgcttatgctatccaggctggacgtgaactacgcgttatcgtagaaagcgaaaaagta
actgatgaaaatgcggcaagcctttcttttgatatttcacagaaaatccaaacggaaatg
acctatccaggtcaggtaaaagttactgttattcgcgaaacaagagcagtcaatatcgca
aaataa
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