Fusarium keratoplasticum: NCS57_00016900
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Entry
NCS57_00016900 CDS
T09757
Name
(RefSeq) hypothetical protein
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
fkr
Fusarium keratoplasticum
Pathway
fkr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fkr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NCS57_00016900
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fkr03019
]
NCS57_00016900
03041 Spliceosome [BR:
fkr03041
]
NCS57_00016900
03009 Ribosome biogenesis [BR:
fkr03009
]
NCS57_00016900
03016 Transfer RNA biogenesis [BR:
fkr03016
]
NCS57_00016900
Enzymes [BR:
fkr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
NCS57_00016900
Messenger RNA biogenesis [BR:
fkr03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
NCS57_00016900
Spliceosome [BR:
fkr03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
NCS57_00016900
Complex C
U4/U6.U5 tri-SnRNP related factors
NCS57_00016900
Ribosome biogenesis [BR:
fkr03009
]
Eukaryotic type
Pre-60S particles
Helicases
NCS57_00016900
Transfer RNA biogenesis [BR:
fkr03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
NCS57_00016900
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
MTR4-like_stalk
DEAD
Helicase_C
DEXQc_Suv3
ResIII
Helicase_dom4_arc
AAA_22
Epiplasmin
nSTAND3
Glyco_hydro_65C
Motif
Other DBs
NCBI-GeneID:
77678435
NCBI-ProteinID:
XP_052918773
LinkDB
All DBs
Position
1:526789..530109
Genome browser
AA seq
1090 aa
AA seq
DB search
MDDMFDVFEGKVEAPSASEDESVPRKRDKTKKRKADEAMNGNAANAAEDVDMDDKTETSK
DEDSDDDDTSDTPSQQDKKRRKKEDGAGPVMTDTFQTAESREVAGASTFVPQDSSLVLSH
NIQHQVALPPDLDYEYVPLSEHKAPDEPARTWNFKLDPFQSLSVASIEREESVLVSAHTS
AGKTVVAEYAVAQCLKRNQRVIYTSPIKALSNQKYRDFEAIFGDVGLMTGDVTINPTASC
LVMTTEILRSMLYRGSEIMREVAWVVFDEIHYMRDKTRGVVWEETIIMLPDKVRYVFLSA
TIPNAFQFAEWIAKIHHQACHVVYTDFRPTPLQNYFFPAGGSGARLIVDEKSNFNEQNFN
LVMQEVEEKKGADPNDPTARQKGKGKNKKTNKGGADSGSDIAKIIRMTIKKKFNPVIVFN
FSKRECENMAMNISSLSFNDDSEKAMVKKVFHSAIESLSEQDRELPQIVNLLPLLERGIG
VHHSGLLPILKETIEILFQESLIKVLFATETFSIGLNMPAKTVVFTQVTKWDGVKRRPLT
SSEYIQMAGRAGRRGLDARGIVIMMIDDKLEPDTAKEIVTGHQDRLNSAFYLGYNMILNL
LRIEAISPEFMLERCFHQFQNAASVPSLEKDLMSLQQERDTMSIPDEATVKDYYQIRQQL
STYTKDMRTVIQHPNYSISYLQPGRLVQIYNPKDDQETVAGNGTDFGWGVIVNQTPRRAP
KLGEPEHIPQESYVIDVLLPISRKSAEIAPGQPAGEMPPGLKPFSDDDDIKFAIVPCLLT
CIKAISQIRLFLPKDGLKTDGDRETLTKSLMEVKRRFPDGLPILDPIENMEITDESFKKL
LRKIEVLESRLLANPLHLSPLLPSLWEQYHTKVKLTDKVKETKKAIAKAYSIAQMDELKS
RKRVLRRLGFINDAEVVQLKARVACEISSTEGHELLLSELLFDRFFNEQTPEMCAAVMSI
FIFDEKVEAPALKEELQKPFREVQAKARIIAKVSQECKLDVNEEEYVQKLKWQLMETVYT
WAQGRPFVEICKMTNVYEGSLIRLFRRLEELLRQMAQAAKVMGNEDLTKKFEESLAKIRR
DIVAAQSLYL
NT seq
3273 nt
NT seq
+upstream
nt +downstream
nt
atggatgacatgtttgatgttttcgagggcaaggtggaggccccgagtgcgagcgaagac
gagagcgtcccccgcaagcgcgacaagaccaagaagagaaaggccgatgaagccatgaac
ggcaacgcggccaacgcggccgaggacgtcgacatggacgacaagaccgagacctccaag
gatgaggattccgacgacgacgacacttcggacacgcccagccagcaagataagaagagg
aggaagaaggaggatggcgcgggtcctgtcatgacggataccttccagacggcagagtcg
agagaggttgctggcgcatctacctttgtgcctcaggactcgtcgctggtcctgtcgcat
aacattcagcatcaagttgcgctgcccccggacctggattacgagtatgttcccttgtcc
gagcacaaggcgcccgacgagccggcgcgaacgtggaactttaagctcgatcctttccag
agtctttccgtggcctcgattgagcgggaggagagtgtgcttgtgtctgcgcacacctct
gccggaaagacggtcgttgcagagtacgccgtcgcgcagtgtctgaagcgcaaccagaga
gtcatctacacgagtcccatcaaggccctgagcaaccagaagtatcgagatttcgaggcc
atctttggagatgtgggcttgatgactggtgacgtgactatcaaccccacggccagttgt
ctggtcatgacgacagagattttgcgatccatgttgtatcgaggttcagagattatgcga
gaagttgcgtgggttgtctttgatgagattcactacatgcgcgacaagacgagaggtgtc
gtttgggaggagaccatcattatgcttcccgacaaggtccgatacgtgttcctctcggcc
actatccccaacgctttccagttcgccgagtggattgccaagatccatcaccaggcctgt
cacgttgtttacactgatttccgaccgactcctcttcagaactacttcttccccgctggg
ggtagtggcgctagactcatcgttgatgagaagagcaactttaacgagcaaaatttcaac
ctggttatgcaagaggtggaggagaagaagggagctgaccccaacgatcctacggcacga
caaaaaggaaagggcaagaataagaagaccaacaagggtggtgcggacagcggctcagac
atcgccaagatcatccggatgactatcaagaagaagtttaaccccgtcattgtcttcaac
ttcagcaagcgagagtgcgagaacatggccatgaacatttcgtccctcagcttcaacgac
gattccgaaaaagctatggttaaaaaggtctttcacagcgccattgagagcttgtcggag
caggatagggagttgcctcagattgtgaaccttctgcccctgttggagcgaggtatcggt
gtgcatcattcaggcctgcttcctattctcaaggagactattgagattctgttccaggag
tctctgatcaaggttcttttcgcgactgagaccttctctatcggcttgaacatgcctgcc
aagactgtcgtcttcacccaggtgaccaagtgggatggtgtcaagagacgtcctctcact
tcttccgagtacatccagatggctggtcgtgctggtcgtcgtggtctcgatgcccgaggt
atcgtcatcatgatgattgacgataagcttgagcccgacactgccaaggagattgttact
ggtcaccaggatcgcctcaactcggctttctacctcggctacaacatgattctgaacctg
ctgcgaattgaggccatctcaccggagtttatgctggagcgatgtttccaccagttccaa
aacgcggctagcgtcccgtctctggagaaggacttgatgtcgctacagcaggagcgcgat
acaatgagcatccctgatgaggcgacagtcaaggactactaccagattcgtcaacagctg
agcacctacaccaaggacatgcgaacagttattcagcaccccaactatagcatttcttat
ctccagcccggccgtctggtgcagatctacaaccccaaggacgaccaggagactgtcgct
ggaaacggtaccgactttggatggggagtcattgtcaaccagactccccgccgagcaccc
aagcttggcgagcccgaacacatcccccaggagtcctacgtcatcgatgttctcctgccc
atctcgaggaagagcgccgaaatcgcccccgggcagccagctggggagatgccccccggc
ttgaagccattctcagacgacgacgacatcaagtttgccattgtgccatgcctgctcacg
tgcatcaaggccatcagccagatccgtcttttcctccctaaggacgggttgaaaacggat
ggcgacagggagacgctcaccaagtctctgatggaggttaagcgccgattccccgatggt
ctgcctattttggatcctattgagaacatggagatcaccgacgagtcgttcaagaagctt
cttagaaagattgaggttctggagtcgaggcttcttgctaaccctctgcatctctctcct
cttcttccctcactatgggagcaataccacaccaaggtcaagctgaccgacaaggtcaag
gagaccaagaaggccatcgccaaggcgtacagcatcgctcagatggatgagctcaagtca
cgcaagcgtgtcctccgccgcctcggtttcatcaacgacgccgaggttgttcagctaaag
gctcgtgtcgcgtgtgagatctcatccactgagggccacgagctgctcctctcggaactg
ctcttcgacagattcttcaatgagcagacacccgagatgtgcgctgctgtcatgagcatc
ttcatctttgacgaaaaggtggaagctcctgctctcaaggaggagctgcagaagcccttc
cgcgaggtccaggccaaggcgagaatcattgccaaggtcagccaggagtgcaagctcgac
gtcaacgaggaggaatatgtgcagaagctcaagtggcagctgatggagacggtctacacg
tgggcccaaggacgtccgtttgttgagatttgcaaaatgacaaacgtgtacgaaggctca
ctcattcgcctcttccgccgtctggaagagctccttcgacagatggcccaggccgccaag
gttatgggcaacgaagaccttaccaaaaagtttgaagagagtctggcaaagatccgcaga
gacattgtggccgcccagagtctttacctgtaa
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