Fusarium keratoplasticum: NCS57_00422600
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Entry
NCS57_00422600 CDS
T09757
Name
(RefSeq) hypothetical protein
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
fkr
Fusarium keratoplasticum
Pathway
fkr03013
Nucleocytoplasmic transport
fkr03015
mRNA surveillance pathway
fkr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
fkr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
NCS57_00422600
09122 Translation
03013 Nucleocytoplasmic transport
NCS57_00422600
03015 mRNA surveillance pathway
NCS57_00422600
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fkr03019
]
NCS57_00422600
03041 Spliceosome [BR:
fkr03041
]
NCS57_00422600
Enzymes [BR:
fkr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NCS57_00422600
Messenger RNA biogenesis [BR:
fkr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
NCS57_00422600
Spliceosome [BR:
fkr03041
]
Complex C
Other components
EJC/TREX
NCS57_00422600
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
NCS57_00422600
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
DUF4844
DUF6066
Motif
Other DBs
NCBI-GeneID:
77682492
NCBI-ProteinID:
XP_052916355
LinkDB
All DBs
Position
3:<2827531..>2829521
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AA seq
476 aa
AA seq
DB search
MSHEEDLIDYSDEEIGGNETAATTSNGKKGELAAGNNVDKKGSYVGIHSTGFRDFLLKAE
LLRAIADCGFEHPSEASVHLASKQEEMAIFSYKSSSLSEEVQQGPEMVRVSGRKQTTVQQ
TCIPQALLGGDIICQAKSGLGKTAVFVLATLQQVEPVNGEVSVVVMCHTRELAYQIRDEY
NRFSKYMPDIKTGVFYGGTPIKTDVETLKNKETCPHIIVGTPGRLKALVRDKALRLGSVR
IFVLDECDKMLDQPDMRTDVQDVFRATPQQKQVMMFSATLSEEVKPICRKFMQNPTEHYV
DEDTKLTLHGLQQYYIKLEEKEKNRKLNELLDDLQFNQVIIFVRSTVRATELDKLLRECN
FPSIAVHSGVSQEERIRRYKEFKEFKKRICVATDVFGRGIDIERINLAINYDLSNDASSY
LHRVGRAGRFGTKGLAISFVSTDQDQEVLKEIEKRFEVALPEFPKEGVDASTYMAS
NT seq
1431 nt
NT seq
+upstream
nt +downstream
nt
atgtcccacgaggaagatctcatcgactactccgatgaggagatcggcggcaacgagacc
gccgccaccacctcgaacggcaagaagggcgagctcgccgccggcaacaatgtcgacaag
aagggcagctacgtcggtattcactcgaccggtttccgcgacttcctgctcaaggccgag
ctccttcgcgccattgccgactgcggtttcgaacatccatcggaggcgtccgtccatctc
gcaagcaagcaagaagaaatggccattttctcctacaaatcgtcgtcgttgtcggaggag
gttcagcagggacctgagatggtccgagtatccgggcggaagcagaccacggtccaacaa
acttgtatccctcaggcacttctcggcggtgacatcatctgccaagccaagtccggtctg
ggaaagacggccgtctttgtcctcgcgacccttcaacaggttgagcctgtgaacggagag
gtctcggttgttgtcatgtgccacacccgtgagctggcctaccagattcgggacgagtac
aaccgcttcagcaagtacatgcctgacatcaagactggtgtgttctacggcggtactccc
atcaagacggatgtcgagaccttgaagaacaaggagacttgccctcacattattgtcggc
actcctggtcgtcttaaggcccttgtccgtgacaaggctctgcgccttggcagcgtccgc
attttcgtcctcgatgagtgcgacaagatgcttgaccagcctgacatgcgtaccgatgtt
caggatgtgttccgcgccactcctcagcagaagcaggtcatgatgttctctgctactctg
tctgaggaggtcaagcccatctgccgaaagttcatgcagaaccctaccgagcactacgtc
gatgaggacaccaagctcaccctccacggtctccagcagtactacatcaagctggaggag
aaggagaagaaccgcaagctcaacgagctcttggatgatctgcagttcaaccaggtcatc
attttcgtccgcagcaccgtccgtgctaccgagcttgacaagctactccgggaatgcaac
ttcccttcgatcgctgttcactcgggtgtcagccaggaggaacgtatccgtcgctacaag
gaattcaaggagttcaagaagagaatctgcgttgctactgacgtcttcggccgaggtatt
gatattgagcgtatcaacctcgccatcaactacgatctttcaaacgacgccagctcgtac
cttcaccgagtcggtcgtgccggccgtttcggtaccaagggtctggccatctctttcgtc
agcaccgatcaggaccaggaggtgctgaaggagattgagaagcgattcgaggtcgccctt
cctgaattccccaaggagggtgttgatgccagcacttacatggcttcctag
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