Ferrigenium kumadai: FGKAn22_05420
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Entry
FGKAn22_05420 CDS
T07187
Symbol
rhlE_1
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
fku
Ferrigenium kumadai
Pathway
fku03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fku00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FGKAn22_05420 (rhlE_1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fku03019
]
FGKAn22_05420 (rhlE_1)
Enzymes [BR:
fku01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
FGKAn22_05420 (rhlE_1)
Messenger RNA biogenesis [BR:
fku03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FGKAn22_05420 (rhlE_1)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
UTP25_NTPase-like
Sacchrp_dh_NADP
AAA_22
Motif
Other DBs
NCBI-ProteinID:
BBI98849
UniProt:
A0AAN1SZZ8
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All DBs
Position
complement(583685..585235)
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AA seq
516 aa
AA seq
DB search
MSNEISFAGLNLAEPILRAIADAGYTHPTPVQAQAIPQVLKGGDLLAGAQTGTGKTAGFT
LPVLHRLSEKPAANPRAGCPRCLILTPTRELAAQVEESVQTYGKYLPLKSMVMFGGVNIN
PQIKALRGQVDILVATPGRLLDHVGQKTLDLSGVEILVLDEADRMLDMGFIRDIKKILAL
LPKQRQNLLFSATFSDEIKALADGLLHNPGYVEVARRNTTSELVEQSVHLIPQKLKSHLL
AHLIKHNDWKQVLVFTRTKHGANRLAEKLTGDGIPSAAIHGNKSQSARTKALSQFKDGTL
PVLVATDIAARGLDIDQLPHVVNFELPNVPEDYVHRIGRTGRAGSNGAAISLVDSEEFPY
LKSIERLIKHAIPKVTIDSFVPPTHIPPEAPRPPRPQHGQRRHSNTTASAPRAGQGQKPR
DGQKSHDGQSQKPRNPQQRDQQARNGQQPRSGSQPGKPRQPQAKKAGEPLLSEAARHQAM
PQPGLFQPAPHARRERGAGQGTGQGRGAPRGGRGRG
NT seq
1551 nt
NT seq
+upstream
nt +downstream
nt
ttgtctaatgaaatttcttttgccggcctgaacctggccgaacccatcctgcgcgccatc
gccgatgccggctacacgcaccccacccccgtccaggctcaggccatcccgcaggtgctg
aagggcggcgacctgctggccggcgcacagaccggcaccggcaagaccgccggcttcacg
ctgcccgtcctgcatcgcctgtccgaaaagcccgccgcgaatccgcgcgcaggctgcccg
cgctgcctgatcctgacgccgacgcgcgaactcgccgcgcaggtggaggaatcggtgcag
acctacggcaagtatctcccgctgaaatccatggtgatgttcggcggcgtgaacatcaat
ccgcagatcaaggccttgcgcggccaggtggacatcctggtcgccacgccgggccgattg
ctcgaccacgtcggacaaaagacgctggatctgtccggcgtcgagatcctggtgctggac
gaagccgaccgcatgctggacatgggcttcatccgcgacatcaagaagatcctcgcgctg
ctgccgaaacagcgccagaacctgctgttctcggcgaccttctccgacgagatcaaggcg
ctggccgacggcctgctgcacaacccaggttatgtcgaagtagcgcgccgcaacaccacg
tccgaactggtcgaacagagcgtgcacctgatcccgcagaagctgaagagccacctgctc
gcacacctgatcaagcacaacgactggaagcaggtgctggtgttcacccgcaccaagcac
ggcgcgaaccgcctggcggaaaagctgaccggtgacggcatcccgtccgccgcgatccac
ggcaacaagagccagtcggcgcgcaccaaggcgctgtcgcagttcaaggacggcacgctg
ccggtgctggtcgccaccgacatcgctgcgcgcggactggacatcgaccagctgccgcat
gtggtgaatttcgaattgccgaatgtgccggaagactatgtgcaccgcatcggccgcacc
ggccgcgcgggcagtaacggcgcggcgatctcgctggtggacagcgaggagttcccgtac
ctgaagagcatcgagcgcctgatcaagcacgcgatcccgaaggtgaccatagacagcttc
gtgccgccgacgcacatcccgccggaagcgccgcgcccaccgcgtccgcaacacggccag
cgccgtcacagcaacaccaccgccagcgcaccgcgcgcaggccagggccagaaacctcgt
gacggccaaaagtcacatgacggtcagagccagaagccgcgcaatccgcagcagcgtgat
caacaggcgcgcaacggccagcagccccgtagcggatcacagcccgggaaaccgcgccaa
ccccaagcgaagaaggccggcgaaccgctgctgtccgaagccgcgcgccatcaggcgatg
ccgcaaccgggattgttccagcccgcgcctcacgcacgccgcgagcgcggagccggacaa
ggcactgggcaagggcgcggcgcaccgcgcggtggacgcggtcgcggctga
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