Ferrigenium kumadai: FGKAn22_05910
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Entry
FGKAn22_05910 CDS
T07187
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
fku
Ferrigenium kumadai
Brite
KEGG Orthology (KO) [BR:
fku00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
fku03009
]
FGKAn22_05910 (rlmD)
Enzymes [BR:
fku01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
FGKAn22_05910 (rlmD)
Ribosome biogenesis [BR:
fku03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
FGKAn22_05910 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
TRAM
Methyltransf_25
TRM5-TYW2_MTfase
Methyltransf_23
Methyltransf_32
Methyltransf_11
Methyltransf_15
MTS
Motif
Other DBs
NCBI-ProteinID:
BBI98898
UniProt:
A0AAN1VZ34
LinkDB
All DBs
Position
637011..638333
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AA seq
440 aa
AA seq
DB search
MTEKTNTQPVVTIESLDQEGRGIAHHEGKVIFIEGALPGERVTYSSYRKKPNFEMAQVGD
ILKPSFMRVEPKCIHFGVCGGCSMQHLEPRAQVSAKQRILEDNLERIGKVKPDNILPPIY
GLPWGYRQRARLSVRHVLKKGKTLVGFHEKRSSYVADMSLCEILPPKISKLIPLLSQLID
GLSIRERLPQIEVVCGDNVDVLVLRIMEPLTEKDEAALRAFADAYDIQFWLQTKGPETVH
PFHPPVAPPLTYTLPEFGVEMPFAPTEFTQVNHRLNRVMVHRALRLLDPQSNERIADFFC
GLGNFTLPIARSGAQVLGIEGSPALVKRGVQGAEHNGLSANTKFMAMNLFEMDEKALADL
GTFDKWLVDPPRDGAVELVKAITPETAPKRIVYVSCNPATLARDAEILVHVKGYTLKAAG
VMNMFPQTSHVESIAVFVKP
NT seq
1323 nt
NT seq
+upstream
nt +downstream
nt
atgactgaaaaaacgaatacccaacccgttgtgaccatcgaatcgctcgaccaggaaggg
cgcggcatcgcgcaccacgaaggcaaagtgatcttcatcgagggcgcattgcccggcgag
cgcgtcacctattcttcctaccgcaagaagcccaatttcgagatggcgcaggtgggagac
atcctcaagccgtcgttcatgcgcgtggagccgaagtgcatccacttcggcgtgtgcggc
ggctgttcgatgcagcatctggaaccgcgtgcgcaggtctcggcgaagcagcgcatcctc
gaagacaacctggaacgcatcggcaaggtcaagccggacaatattctgccgccgatctac
ggcctgccgtggggctaccgccagcgcgcgcgtctgtcggtgcgccatgtgctgaagaag
ggcaagacactggttggcttccacgagaaacgcagcagctacgtggcggacatgtcgctc
tgcgagatcttgccgccgaagatatccaaactgattcccttgttgtcccagttgatcgac
gggctatccatccgcgagcgtctgccccagatcgaggtggtctgcggcgataacgtggat
gtgctggtactgcgcatcatggagccgctcaccgaaaaggacgaagctgcactgcgcgca
ttcgccgatgcttacgacatccagttctggctgcaaaccaagggacccgaaacggtgcat
ccgttccacccgccggttgcgccgccactgacttacacattgccggagttcggcgtcgag
atgccgttcgcgccgaccgaattcacccaggtcaatcaccgtctcaaccgtgtgatggtg
catcgcgcactgcgcctgctcgatcctcaatcgaatgagcgaatcgcggatttcttctgc
gggctgggcaacttcaccctgccgatcgcgcgtagcggcgcgcaggtgctgggcatcgaa
ggcagcccggcgctggtgaagcggggcgtgcagggggccgaacataacggcctgtccgcc
aacacgaaattcatggcgatgaacctgttcgagatggacgagaaggctctcgccgatctg
gggacattcgacaaatggctggtcgatcctccgcgcgacggtgcggtggagctggtaaag
gcgatcacgccggagactgcgcctaagcgcattgtttacgtgagttgcaatcccgctacg
ctggctcgcgatgcggagatactggtgcacgtgaagggctacacgttgaaggcggcgggc
gtgatgaacatgttcccgcagacctcgcacgtcgagtccattgccgtcttcgtcaaacct
tga
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