Ferrigenium kumadai: FGKAn22_07760
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Entry
FGKAn22_07760 CDS
T07187
Symbol
rtcB
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
fku
Ferrigenium kumadai
Brite
KEGG Orthology (KO) [BR:
fku00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
fku03016
]
FGKAn22_07760 (rtcB)
Enzymes [BR:
fku01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
FGKAn22_07760 (rtcB)
Transfer RNA biogenesis [BR:
fku03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
FGKAn22_07760 (rtcB)
Prokaryotic type
tRNA splicing ligases
FGKAn22_07760 (rtcB)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
BBI99083
UniProt:
A0AAN1SY24
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All DBs
Position
813683..815113
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AA seq
476 aa
AA seq
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MDLSGFERISEFEWQAPATGAMRVPVVIFADEALMRAMDEKVREQASRVAMLPGIVRASY
AMPDAHWGYGFPIGGVAAFDADEGGVVSAGGVGFDISCGVRCLHTGLKSAELLRQQVRLA
DALSRAIPAGVGSTGELRLSAAEMDDMLTGGARWAVERGYGDAADLERVEEGGQMKGAMP
QQVSVQAKQRQRDEMGTLGSGNHYLEVQRVAEVYDEKIAAAYGVAVDDVVVSIHCGSRGL
GHQIGTEFLRQMVVAAPSHGIVLPDRELACAPIESELGRSYLGAMRAAINCALANRQILT
HLLRQVFAQVFPQARLPLLYDVSHNTCKVEEHEVDGRQRRLYVHRKGATRAFGPGHPDIP
SALRAAGQPVLIGGSMGTSSFILAGTERGMKLAYGSACHGAGRAMSRHEATRRWHGREVT
DELAERGILIRSPSFRGVAEEAPGAYKDVSAVVDAADSAGLARKVAKLVPLVCVKG
NT seq
1431 nt
NT seq
+upstream
nt +downstream
nt
atggacctttcaggtttcgaacgcatttccgaattcgagtggcaggctcccgccaccggc
gcgatgcgcgttccggtggtgatcttcgccgacgaggcgctgatgcgcgcgatggacgaa
aaggtgcgagagcaggcctcgcgggtcgccatgctgcccggcatcgtgcgcgcctcctat
gcgatgcccgatgctcactggggctatggttttcccatcggcggcgtggccgccttcgat
gccgatgaaggcggcgtggtctccgcgggtggcgtgggcttcgacatctcctgtggcgtg
cgctgcctgcataccggactgaaatccgccgagcttctccgtcagcaggtgcggttggcc
gatgcgttgtcccgcgccattcccgccggcgtgggcagcacaggggagttgcgcctgtcc
gcggcggaaatggatgacatgctgaccggcggtgcgcgctgggcggtggagcgcggctac
ggcgatgccgccgacctcgaacgcgtcgaggagggcgggcagatgaaaggggccatgccg
caacaggtatcggtgcaggccaagcagcgccagcgcgacgagatgggcacgctgggctcc
ggcaaccactacctcgaagtgcagcgcgtggccgaggtctatgacgagaagatcgctgcc
gcctacggggttgccgtggacgacgtggtcgtcagcatccattgcggctcgcgcggcctg
gggcaccagatcggcaccgagttcctgcggcagatggtggtcgcagcgcccagccacggc
atcgtgctgccggaccgcgagcttgcctgcgcgccgatcgaatccgagctcgggcgcagc
tacctgggcgcgatgcgcgccgcgatcaactgcgcgctggcgaaccgacagatcctcacc
cacctgctgcgacaggtgttcgcgcaagtgttcccgcaggcacgcctgccgctgctctac
gatgtgtcgcacaacacctgcaaggtcgaggaacatgaggtggatggacgacagcggagg
ctgtacgtgcaccgcaagggcgcgacacgcgccttcggtccaggccatccggatattcca
tccgccctgcgtgccgcgggccagccggtgctgatcggcggcagcatgggcacctcctcg
ttcattcttgcgggcaccgaacgaggcatgaagctcgcctacggttcggcttgccacggt
gcgggacgcgcaatgagccgccatgaggccacgcgccgctggcacgggcgcgaggtcacc
gacgaacttgcggaacgcggcatcctgatccgcagtccgtctttccgcggcgtggcggaa
gaggcgcccggcgcctacaaggacgtgagcgcggtggtcgatgcggcggacagtgcgggg
ttggcgcgcaaggtggcgaagctggttccgttggtctgtgtgaaggggtga
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