Ferrigenium kumadai: FGKAn22_19900
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Entry
FGKAn22_19900 CDS
T07187
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
fku
Ferrigenium kumadai
Pathway
fku02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
fku00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
FGKAn22_19900 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
fku03021
]
FGKAn22_19900 (rpoD)
Transcription machinery [BR:
fku03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
FGKAn22_19900 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r2
Sigma70_r3
Sigma70_r4
Sigma70_r1_2
SPO22
TMPIT
Motif
Other DBs
NCBI-ProteinID:
BBJ00298
UniProt:
A0AAN1T0S0
LinkDB
All DBs
Position
complement(2112337..2114268)
Genome browser
AA seq
643 aa
AA seq
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MATPKDKRKQDKKSADVIEQPVVDQQQDIEARRTRLKALIVLGKERGYLTYAEINDHLPD
MLEVEQIEGVVSMINDMGISVCDVAPDAETLIMTETAPPVADEDAAEEAEAALSTVDSEF
GRTTDPVRMYMREMGTVELLTREKEIEIAKRIEEGLKHMIQAISACPATIAEILALAAKV
ENDQLRIDELIDGFVDSEDEAVIGEEGDEEAEEEGAEEVSDEEEDEDATAAAAAANLAQL
KADALARFAIIADLFVKMGKAYEKHGYRSKQYDKLQTGISDELMNFRFSAKQVDALCDTM
RGLVEEVRRSERSIQDLCVTKGKMPRPHFIKVFPGNEDNLEWVVQELKAKKPYCETLERY
QHAIVEQQQKLLDLQQRVGIPIKDLKEINKQMTNGEAKARRAKRDMIEANLRLVISIAKK
YTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIP
VHMIETINKMNRISRQILQETGVEPDAATLAIKMEMPEDKIHKILKIAKEPISMETPVGD
DDDSHLGDFIEDQNTTVPIDAAVYESLRGATKDILDSLTQREAKVLRMRFGIEMNTDHTL
EEVGKQFDVTRERIRQIEAKALRKLRHPSRSEKLKSFLDSEGS
NT seq
1932 nt
NT seq
+upstream
nt +downstream
nt
atggcaacacctaaggacaagaggaagcaggacaagaaatcggctgacgtgatcgaacag
ccggtcgttgaccagcagcaggacatcgaggcacgccgtacgcgcctgaaggccctgatc
gtgctgggcaaggagcgcggctacctgacttacgccgagatcaacgaccacctgccggat
atgctcgaggtcgagcagatcgagggtgtggtgagcatgatcaacgacatgggtatctcg
gtatgcgatgtcgcgcctgatgccgaaacgctgatcatgaccgagactgctccgcccgtg
gccgacgaggatgctgccgaggaagctgaagccgccctgtccaccgtggactccgagttc
ggccgcaccaccgacccggtgcgcatgtacatgcgcgaaatgggcacggtcgagctgctt
acccgcgaaaaagaaatcgagatcgccaagcgcatcgaagaaggcctgaagcacatgatc
caggcgatttccgcctgtccggcgaccatcgccgagatcctggcactggccgcaaaggtt
gaaaacgaccagttgcgtatcgacgaactgatcgacggtttcgtggatagcgaagacgag
gccgtgattggcgaggagggcgacgaagaggccgaggaagaaggcgccgaggaagtctcc
gacgaagaagaggacgaagacgccactgcggctgccgcggcggccaacttggctcagctg
aaggccgacgcgctggcgcgctttgccatcatcgccgacctgttcgtcaagatgggcaag
gcctacgagaagcatggctaccgcagcaagcagtacgataagttgcagaccggcatctcc
gacgaactgatgaacttccgcttctcggcgaagcaggtggacgcactgtgcgacacgatg
cgcggcctggtggaagaggtgcgccgcagcgagcgcagcattcaggatctgtgcgtgacc
aagggcaagatgccgcgcccgcatttcatcaaggtcttcccgggcaatgaagacaacctg
gaatgggtggttcaggaactgaaggcgaaaaaaccctattgcgaaacgctggagcgatac
cagcacgccatcgtcgagcagcagcagaagctgctcgacctgcaacagcgcgtgggcatc
cccatcaaggatctgaaggagatcaacaagcagatgaccaacggcgaagccaaggcacgc
cgcgccaagcgcgacatgatcgaggccaacctgcgtctggtgatctccatcgccaagaaa
tacaccaaccgcggcctgcagttcctcgacctgatccaggaaggcaacatcggcctgatg
aaggccgtggacaagttcgaatatcgccgcggttacaagttctcgacctatgcgacatgg
tggatccgccaggcgatcacccgctccatcgcggaccaggcgcgcactatccgcatcccg
gtgcacatgatcgagaccatcaacaagatgaaccgcatctcgcgccagatcttgcaggaa
accggtgtcgagccggatgccgcgacgctggcgatcaagatggagatgcccgaggacaag
atccacaagatcctcaagatcgccaaggaaccaatctcgatggaaacaccggtgggcgac
gacgacgactctcacctgggagacttcatcgaagaccaaaacaccaccgtgccgatcgac
gcggcggtgtacgagagcctgcgcggcgcgaccaaggacattctcgacagcctgacgcaa
cgcgaagccaaggtgctgcgcatgcgtttcggtatcgagatgaacaccgaccacacgctg
gaagaagtcggcaagcagttcgacgtcacccgcgaacgcatccgccagatcgaagccaag
gccctgcgcaaactgcgccatccttcgcgctccgagaagctgaagagcttcctcgacagc
gaaggcagctga
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