Flavisolibacter tropicus: SY85_06460
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Entry
SY85_06460 CDS
T04392
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
fla
Flavisolibacter tropicus
Pathway
fla03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fla00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SY85_06460
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fla03019
]
SY85_06460
03009 Ribosome biogenesis [BR:
fla03009
]
SY85_06460
Enzymes [BR:
fla01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SY85_06460
Messenger RNA biogenesis [BR:
fla03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SY85_06460
Ribosome biogenesis [BR:
fla03009
]
Prokaryotic type
rRNA helicases
SY85_06460
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
SNF2-rel_dom
CMS1
Cas3-like_C_2
AAA_22
Helicase_RecD
Motif
Other DBs
NCBI-ProteinID:
ANE50198
UniProt:
A0A172TTC4
LinkDB
All DBs
Position
complement(1556785..1558458)
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AA seq
557 aa
AA seq
DB search
MSLFSELGLNEKLLKGVEDLGFTEPTSIQEKAIPVLLSGTKDLIGLAQTGTGKTAAFGLP
LLQLIDAQQKHPQALIVCPTRELCLQIEKEVESFKKYLPAIHIVAVYGGSSISMQIRDIR
RGIQIVVATPGRLIDLIERKAINLQQIKYVVLDEADEMLNMGFKEDIEFILQNTPERDST
WLFSATMPPEIRNVSKRYMQDPVELTVGKKNTANKNIDHQYFVTPAHSRYETLKRLIDFN
PGMYGIIFTRTKADAQDIAEKLTREGYDIDALHGDLTQAQRNKVMDEFREKSLQLLIATD
VAARGIDVSGITHVINYELPDDVEVYTHRSGRTGRAGKTGVCMSIVHAREVGRIRQIERM
VQAPFHKLEIPSGKDVCRKQFYFFMDKLLQTDISHGDYETYMPMLAEKFADVTKEEVLKR
VAALEFDRFLRYYENAEDLNARERGREDRGRQPEGRGERQGDKRREGKREFGKGNGNYER
LFVNLGTKDGFYKASFLQFILDMSDLNKDVLGRIDMKEMNSWIEIDKGAAGQMIKAIDGK
KYKGRRIRMNEADSVRR
NT seq
1674 nt
NT seq
+upstream
nt +downstream
nt
atgagtttgttttcagagttgggtttgaatgaaaagttgttgaaaggagtagaagactta
ggatttacagagccaacgagcatacaggaaaaagccattcctgttttattatcaggcaca
aaagatttaatcgggctggctcaaacaggtactggtaaaacagcggcctttggtttgccc
cttttacaattaatagatgcgcaacagaaacacccccaggcattaattgtttgtcctacc
agagagttgtgtttgcagattgagaaagaagtggagtctttcaaaaaatacctgcctgct
atacatatagtggctgtatatggtggatcatctatttctatgcagatccgcgatatcagg
agaggaatacaaattgtggtggccacacctggtcgcttaattgaccttattgaaagaaaa
gcaattaatctacaacagattaaatacgttgttctggacgaagccgatgagatgttaaac
atgggcttcaaagaagatattgagtttattctgcaaaacacaccggagcgtgacagtacc
tggttgtttagtgctactatgccgccagagatccgtaacgtaagcaagcgttacatgcaa
gatccggtagaattaacggtaggtaaaaagaatacagctaataaaaatattgaccatcaa
tattttgtaacaccagcgcatagccggtatgaaacgttaaagcgtttaatcgacttcaac
ccgggtatgtatggtatcatctttacacgtactaaggctgacgctcaggatattgctgaa
aagcttaccagggaaggttatgatatagatgccttacatggcgatctgacccaggcgcag
cgtaataaagtaatggatgaattccgtgaaaaatcattacaacttttaatcgctactgac
gtagccgccaggggtattgacgtttctggtattacgcatgttatcaactacgagttgcca
gatgacgtggaggtatacacgcaccgtagtggtcgtacgggtagagccggcaaaacaggt
gtttgtatgtcaattgtacatgcccgtgaggtaggccgtatacgccaaattgaaagaatg
gtgcaggctcctttccataaattggaaataccttctggaaaagatgtgtgccgcaagcag
ttctatttctttatggataagctgctgcaaacagatataagccatggcgattatgaaacg
tatatgcctatgttggcagagaagtttgccgatgtaactaaagaagaagtgttgaagcgg
gtagctgctttagaatttgaccgtttcctgcgttattatgaaaatgccgaagacctgaat
gcccgtgagagaggacgtgaggacagaggccgtcagcctgaaggtagaggtgagcgccag
ggagataaacgtcgtgaaggaaaacgtgaatttggtaaaggaaatggtaattatgaacgc
ttgtttgtaaacctgggtacaaaagatggcttttataaagcttcattccttcagtttata
ttagatatgagtgacctgaataaagacgtgttaggtcgcattgatatgaaggaaatgaac
agctggatagaaattgataaaggagccgctggtcagatgatcaaggcaattgatggtaag
aaatataaaggacgtcgtatccggatgaatgaagcagattccgtgcgtcgataa
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