Flavisolibacter tropicus: SY85_22355
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Entry
SY85_22355 CDS
T04392
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
fla
Flavisolibacter tropicus
Pathway
fla03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
fla00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
SY85_22355
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
fla03021
]
SY85_22355
03400 DNA repair and recombination proteins [BR:
fla03400
]
SY85_22355
Enzymes [BR:
fla01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
SY85_22355
Transcription machinery [BR:
fla03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
SY85_22355
DNA repair and recombination proteins [BR:
fla03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
SY85_22355
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Biotin_lipoyl
Biotin_lipoyl_2
Motif
Other DBs
NCBI-ProteinID:
ANE52806
UniProt:
A0A172U0M3
LinkDB
All DBs
Position
5227558..5231850
Genome browser
AA seq
1430 aa
AA seq
DB search
MAFNKRDNRPRPSFSKITIGLASPDSILEKSFGEVLKPETINYRTYKPERDGLFCERIFG
PVKDYECACGKYKRIRYKGIVCDRCGVEVTEKKVRRERMGHIKLVVPVVHIWYFKSLPNK
IGYLLGMSSKKLESIVYYERFVVIQSGIRADKGQNYGDLLTEEEYLDILDTLPKDNQYLP
DEDPNKFVAKMGAEAVSDLLARIDLDQLSYDLRNAAATETSQQRKADALKRLSVVEAFRD
AQTRISNRPEWMVMQYIPVIPPELRPLVPLDGGRFASSDLNDLYRRVIIRNNRLKRLLEI
KAPEVILRNEKRMLQEAVDSLFDNSRKSNAVKAEGGRALKSLSDVLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPEMKLHECGLPKDMAAELFKPFIIRKLIERGIVKTVKSARKLVDKKE
AVVWDILENILKGHPVMLNRAPTLHRLSIQAFQPKLVEGKAIQLHPLVTTAFNADFDGDQ
MAVHVPLSHAAILEAQLLMLASHNILNPQNGTPITLPSQDMVLGLYYISKGKKSTETEKV
RGEGKAFYSQEEVIIAYNEKRVDLHAHIKVKANVRQGEQLVNRLVETTVGRVLFNQFVPY
EVGYVNALLTKKNLREIIGDIIKITNVPKTAKFLDDIKQLGFRMAYSGGLSFSINDLIIP
DIKQELLDNAKNEVDEVWENYNMGLITNNERYNQIVDIWSRVDTRITETLIRELATDKQG
FNSVYMMLDSGARGSKQQIKQLAGIRGLMAKPRKSGSTGSEIIENPILSNFKGGLNVLDY
FISTHGARKGLADTALKTADAGYLTRRLVDVAQDVVITEEDCGTLRGIATSALKDNEDII
EPLSDRIEGRTSVHDVYNPVTEELIIAAGNEITTDIANLIEEVGIETVEIRSVLTCEAKR
GTCVKCYGKNLATGILAQRGDAVGIIAAQSIGEPGTQLTLRTFHVGGVAGSASVESTLPA
KFDGTVQFDGVRSVTTTNNEGDKVQVVIGRTGEVRIVDEKNDRLLITNNVPYGATLLVKD
GQKIKKGDVICTWDPFNNVIVAEQNGKLKFENVLEGITFREEADEQTGHREKVVIETRDK
TKIPSIIVEGKDKKSYNLPTGSHIVVDEDEDVKAGQVIVKIPRVLGKLRDITGGLPRVTE
LFEARNPSNPAIVSEIDGVVTMGAVKRGNREIIIEAKDGVTRKYLVPLTRQILAQDGDFV
KAGSPLSDGQIAPQDILSIQGPFAVQQYVVNEIQEVYRLQGVRINDKHIEVIVRQMMRKV
SIVDPGDTKFLEDDLVDKFEFLEENDYIFDKKVITEAGESSRMRPGQIVSLREIREENSI
LRRSDKTLVEYRDAKPATSAPTLLGITKASLGVTSWISAASFQETTKVLSSAAIQGKTDD
MLGLKENVITGHLIPAGSGLREFDNFIVGSKEEYELLQTAREAMNFDEEE
NT seq
4293 nt
NT seq
+upstream
nt +downstream
nt
atggcttttaataaaagagataatcgtccaagaccatcgttttcaaagattacgattggt
ttggcttctcccgacagcattttagaaaaaagctttggtgaagtactaaagccggagacc
attaactatcgtacctataaacctgaaagagatggtttgttctgcgaaagaatttttggt
cccgtaaaagattacgagtgtgcttgcggtaagtataagcgtattcgttataagggcatc
gtttgcgaccgttgtggtgtagaggtaactgagaagaaggtacgtcgtgagcgtatgggc
catattaaattagtagtgcctgtagttcatatctggtatttcaaatctctgcctaataaa
attggttacctgttaggaatgagctctaagaaattagagtctattgtttactatgagcgt
tttgtagtaattcaatcaggtatccgtgctgataaaggtcagaactacggcgacttattg
actgaagaagagtatttggacattttggatacccttccaaaagataaccaatacctgcct
gatgaagatcctaacaagttcgtagccaaaatgggtgcggaagctgttagtgacttgttg
gcaagaatcgacttagatcagttgtcttatgatctacgtaatgcagcagcaacagaaact
tctcagcaacgtaaagcggacgccttaaagcgtttgtctgttgtagaagctttccgtgat
gcacaaacaagaatttctaaccgtcctgaatggatggtaatgcaatacattccggtaatt
ccaccagaactgcgtccgttagtgccgctggatggtggtcgttttgcgtcttctgacctg
aatgatttataccgtcgtgtaattatccgtaacaaccgtttgaagcgtttgttagagatt
aaagcgccagaagtaatcttacgtaacgaaaagcgtatgttacaggaagcggttgactct
ttatttgataacagccgtaagtctaacgccgttaaagcggaaggtggccgtgccttgaaa
tcactttctgatgtattgaaaggtaagcaaggtcgtttccgtcagaacttgttaggtaaa
cgtgttgactactctggtcgttctgtaattgtagtgggacctgagatgaagttgcacgag
tgcggtttgccaaaagatatggctgctgaattattcaagccatttatcattcgcaagttg
attgaaagaggtatcgtaaaaacagtgaaatcagcccgtaaactggttgataagaaagag
gctgtggtttgggatatcttagaaaatattttgaaaggtcacccggtaatgttaaaccgt
gccccaacgctgcaccgtttatctatccaggccttccaaccgaagttagtagaaggtaaa
gcgattcaacttcacccgttggtaacaacagccttcaacgccgactttgatggtgaccaa
atggcggtacacgtgcctctgagccatgccgctatcttggaagctcaattgttgatgttg
gcttctcataacattttgaacccgcagaacggtacgccaatcacccttccttctcaggac
atggtacttggtctgtactatatttctaagggtaagaaatcaactgaaactgaaaaagtt
cgtggtgaaggaaaagctttctatagccaggaagaagttatcattgcttacaatgaaaag
cgtgtagatctacatgcgcatattaaagtaaaagcaaatgtgcgtcagggtgagcaattg
gtaaacagattagtggaaactactgtaggtcgtgtattgttcaaccaattcgttccatac
gaagtaggctatgtaaatgccttgttgaccaagaaaaacctgcgtgagatcattggtgat
atcattaagattacaaacgttccaaagacggctaagttcctggatgatatcaaacaatta
ggtttccgtatggcgtactctggtggtctgtcattctctatcaatgacttgatcatccca
gatattaagcaagaattactggataacgcgaagaatgaagtagacgaagtgtgggaaaac
tacaacatgggtctaattacaaacaacgagcgttataaccagatcgtagatatttggtct
cgtgtggatacccgtatcactgaaacattgatccgcgaattagcaacggataagcaaggt
ttcaactctgtatacatgatgttggattccggtgcccgtggttctaagcagcagatcaag
cagttggctggtattagaggattgatggcaaagccacgtaaatctggttctactggttct
gagatcattgaaaacccgatcctttccaactttaaaggtggtctgaacgtattggattac
tttatctctacgcacggtgctcgtaaaggtcttgcggatacggcccttaaaacagccgat
gccggttacctgacccgtcgtctggtagacgttgcacaagatgttgtaatcactgaggaa
gattgcggtacactacgtggtatagctacttctgcattgaaagataacgaggatatcatt
gagccattgtctgaccgtattgaaggtcgtacttcagtacacgatgtatataatcctgta
acggaagaattaatcattgcggctggaaacgagatcactactgatattgcgaacttgatt
gaagaagttggtattgaaacagtagaaatccgttctgtactgacatgtgaagccaagcgt
ggtacgtgtgtgaagtgttatggtaagaacctggcaacaggtattctggctcaacgtggt
gatgcggttggtattattgctgcacagtcaatcggtgaacctggtacacagttaacacta
cgtaccttccacgtgggtggtgtggctggttctgcttcagtagaatctacattgccagct
aagtttgacggtacagtgcagtttgatggtgtacgttcagtaacaaccacgaataacgaa
ggtgataaagtacaagtagtaattggtcgtacaggtgaagtgagaatcgtagacgagaag
aacgatcgcttgttaatcactaacaacgttccttacggtgctactttattagtgaaagat
ggtcagaagatcaagaaaggtgatgtaatctgtacatgggatccattcaataacgtaatc
gtagctgaacaaaatggtaagctgaagtttgagaatgtgcttgaaggtattacgttccgt
gaagaggctgatgagcaaactggtcaccgcgagaaagtggtaattgaaaccagagataaa
actaagattccatcaattattgttgaaggaaaagataagaaatcatacaacttacctaca
ggtagccatatcgtagttgacgaagatgaggatgtaaaagcaggtcaggttattgtgaag
atccctcgtgtgttaggtaagttgagagatatcaccggtggtcttccacgtgtaaccgag
ttgtttgaagctcgtaacccaagtaaccctgctatcgtatctgagatcgatggtgtggta
accatgggagcagttaaacgtggtaaccgtgagatcatcattgaagcaaaagatggcgta
acccgtaaatacttagttccattgactcgccagatcctggcacaagatggtgactttgtg
aaggctggttctccattatctgatggtcagattgcaccgcaggatattctttctattcaa
ggtccatttgccgtacaacagtatgtggtgaatgagatccaggaagtttatcgcttacaa
ggtgtaagaattaacgataagcacattgaggtgattgtgcgtcagatgatgcgtaaggta
tctattgtagatccaggtgatacgaagttcttggaagatgatctggttgataagtttgag
ttcttagaagagaatgattacattttcgataagaaggtaattactgaagccggagaatca
tcaagaatgcgtcctggtcagattgtaagtctgcgtgagattcgtgaagagaattcaatt
ttacgtcgtagcgataagacgttggttgaataccgtgatgcgaagccggctacatctgct
ccaaccttgttaggtatcacgaaggcttcattaggtgtaaccagctggatttctgcagct
tcgttccaagaaacaactaaagtgttgtcttcagctgcgatccaaggtaagaccgacgac
atgctaggcttgaaagaaaacgtgatcactggtcacttaatacctgcaggttctggtctg
cgtgaattcgataacttcatagtaggtagcaaagaagaatatgaattgctgcaaacagct
cgtgaagccatgaatttcgacgaagaagaataa
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