Flavobacterium sp. CLA17: HAV12_002870
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Entry
HAV12_002870 CDS
T11036
Symbol
rpoN
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
flav Flavobacterium sp. CLA17
Pathway
flav02020
Two-component system
flav02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
flav00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
HAV12_002870 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
HAV12_002870 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
flav03021
]
HAV12_002870 (rpoN)
Transcription machinery [BR:
flav03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
HAV12_002870 (rpoN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_CBD
Sigma54_DBD
Sigma54_AID
LacI
RedAm-like_C
Motif
Other DBs
NCBI-ProteinID:
QSB27706
LinkDB
All DBs
Position
complement(687557..689017)
Genome browser
AA seq
486 aa
AA seq
DB search
MLKQFLNLKLSQKLSPQQIQLMKLIQLPTQAFEQRLLEEMNENPALEAGKEDEYEADEFA
NEEYDDYDDAESDRIEADDINIDEYLSDDDTPDYKTQVNNYGDEEERETPFASPISFHQD
LINQLNTFILNDEEREIAEFLVGSIDDMGYIRRSVADIVDDMAFTQGIYTDDVMVEKMLH
VIHELEPSGVGARDLQECLLLQLKHKTPTEYVDLAIDIIENQFDAFTKKHYDKLLQKYSV
SNEQLKKAIHEIERLNPKPGGSYTGNNKVTENVVPDFAIRITDGELELTLNGRNAPSLHV
SKDYQEMMQTYKDSRDKSSAQKDAVQFIKQKLDSAKWFIDAIRQRQETLFVTMNAIMHYQ
EEYFLDGDETKLKPMILKDIADMVGLDISTISRVANSKYVETPYGTKLIKEFFSEAMKND
QGEDVSTLEIKKILQNTIEEEDKKKPLPDDQLADILKEKGYPIARRTIAKYREQLDIPVA
RMRKKI
NT seq
1461 nt
NT seq
+upstream
nt +downstream
nt
atgctaaagcaatttttaaatttaaaattatcccaaaaattatctccacagcaaattcag
ctgatgaagttaattcaattgcctacgcaagcttttgaacaacgtttattagaagaaatg
aacgaaaatccggctttagaagctggaaaagaagacgaatacgaagcggatgaatttgcg
aatgaagaatacgacgattatgacgatgcagaatcggacagaattgaagccgacgacatt
aacatagatgaatacttaagcgacgacgatactccggattacaaaacgcaggttaacaat
tacggagacgaagaagaacgcgaaactccttttgcttctccgattagttttcatcaggat
ttaatcaatcagctgaatacttttattctgaatgatgaagagcgcgaaatcgctgaattc
ctcgtaggaagtattgatgacatgggttacatccgcagaagtgttgccgacattgtagac
gacatggcttttacgcagggtatttataccgatgacgtaatggttgaaaaaatgctgcat
gtaattcacgaactggaaccttcgggagtcggggcacgtgatttacaggaatgtttatta
ttgcagttaaagcacaaaacaccaaccgaatatgttgatttggcaattgatattatcgaa
aatcagtttgatgcttttaccaagaaacattacgataaactattgcagaaatacagcgtt
tccaacgaacagctgaaaaaagcgattcacgaaattgaaaggctaaacccgaaaccggga
ggatcttacaccggaaacaataaagtgacagaaaacgtagttccggattttgcgatccga
attaccgacggtgagctggaactgaccttaaacggaagaaatgccccttccctgcacgtt
tccaaggattatcaggaaatgatgcagacgtataaagattcccgtgataaatcgagtgct
caaaaagatgccgttcagtttatcaaacaaaagctggattctgccaaatggtttatagac
gcgataagacagcgtcaggagacgctttttgtgaccatgaatgccattatgcattatcag
gaggaatacttcctggatggcgacgaaacgaagctaaaaccaatgatcttaaaagacatt
gcagatatggttggattggacatttcaacgatttcccgtgtggccaacagcaaatatgta
gaaacaccctacggaacaaaactgattaaagaatttttctctgaggccatgaaaaacgat
cagggtgaagatgtttcaactttagagatcaaaaaaatacttcagaatacgattgaagaa
gaagacaaaaagaaacctcttccggacgatcaactggctgatatcctaaaagaaaaaggc
tatccgattgcgagaagaacaatcgccaaatatcgcgaacagcttgacattccggtagca
aggatgaggaaaaagatttag
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