Flavobacterium sp. CLA17: HAV12_006340
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Entry
HAV12_006340 CDS
T11036
Symbol
rimO
Name
(GenBank) 30S ribosomal protein S12 methylthiotransferase RimO
KO
K14441
ribosomal protein S12 methylthiotransferase [EC:
2.8.4.4
]
Organism
flav Flavobacterium sp. CLA17
Brite
KEGG Orthology (KO) [BR:
flav00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
flav03009
]
HAV12_006340 (rimO)
Enzymes [BR:
flav01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.4 Transferring alkylthio groups
2.8.4.4 [ribosomal protein uS12] (aspartate89-C3)-methylthiotransferase
HAV12_006340 (rimO)
Ribosome biogenesis [BR:
flav03009
]
Prokaryotic type
ribosomal protein modification factors
HAV12_006340 (rimO)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Radical_SAM
UPF0004
TRAM_2
TRAM
CLP1_P
DUF5005
Motif
Other DBs
NCBI-ProteinID:
QSB28354
UniProt:
A0A7Y3TCY3
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All DBs
Position
complement(1424382..1425695)
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AA seq
437 aa
AA seq
DB search
MRTKSLKKNKINVITLGCSKNVYDSEVLMGQLRASGKDVEHEAPAEREGNIIVINTCGFI
DNAKAESVNMILEYADKKDKGLVDKVFVTGCLSERYRPDLEKEIPNVDQYFGTTELPQLL
KALGADYKHELLGERLTTTPKNYAYLKIAEGCDRPCSFCAIPLMRGKHVSQTIEKLVKEA
EGLAKNGVKELILIAQDLTYYGLDLYKKRNLGELLEALVKVEGIEWIRLHYAFPTGFPMD
VLEIMKREPKICNYIDIPLQHISDSILKSMRRGTTQAKTTQLLKEFRAAVPGMAIRTTLI
VGYPGETQEDFEILKDFVQEMKFDRMGCFAYSHEENTHAYLLEDDVPEDVKQARANEIME
LQSQISWDLNQEKVGKVFKCIIDRKEGAHFVGRTEFDSPDVDNEVLIDAAKHYVKTGDFV
NIKIIEATEFDLYGEPA
NT seq
1314 nt
NT seq
+upstream
nt +downstream
nt
atgagaaccaagtctttaaaaaagaacaaaattaacgtaatcactcttgggtgttcgaag
aatgtatatgacagtgaagtcctgatggggcagcttcgtgcaagcggaaaagatgttgaa
catgaagcgcctgcagagcgagaaggaaacatcattgtaattaacacctgtggttttatt
gataatgccaaagcagaatcggtaaacatgattttggaatatgctgataaaaaagacaaa
ggacttgttgataaagtttttgtaaccggatgtttatcggagcgttacagacctgattta
gaaaaagaaattccgaatgttgatcaatattttggtacaaccgaactgcctcagttactg
aaagcattaggagccgattataaacatgaattattaggagaacgtttaactacaactcct
aagaactacgcttacttaaaaattgcagaaggctgcgacagaccctgcagtttctgtgca
attccattaatgcgcggtaaacacgtttcgcaaacaattgaaaaattagttaaagaagca
gaaggcctggctaaaaacggagttaaagaacttattttgattgctcaggatttaacttat
tatggtcttgacctttataaaaagagaaatcttggcgaacttctggaagctttagtaaaa
gttgaaggcattgagtggatccgtctgcattacgctttccctaccggtttcccaatggac
gttttagaaatcatgaaacgcgaacctaaaatttgtaattatattgatattccattgcaa
cacatttcggattctatcctgaaatcgatgcgtcgtggaactacgcaagctaaaacaact
caattattaaaagaattccgtgctgctgttcccggaatggcaatcagaacgactttaatt
gttggatatccgggtgaaacacaggaagattttgaaattttgaaagattttgttcaggaa
atgaaatttgacagaatgggatgtttcgcttattcacacgaagaaaacacgcatgcttac
ttacttgaagatgatgttccggaagatgtaaaacaagcgagagctaatgaaatcatggaa
ttacaatctcaaatctcatgggatttaaatcaggaaaaagttggaaaggtctttaaatgt
atcattgaccgaaaagaaggagcgcattttgtaggccgaacggagtttgatagtcctgat
gtggataacgaagtattaattgacgctgccaaacattacgtaaaaacaggagattttgtt
aatatcaagataattgaagcaacagaatttgatttatacggagaacctgcttaa
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