KEGG   Flavobacterium sp. CLA17: HAV12_009865
Entry
HAV12_009865      CDS       T11036                                 
Symbol
ligD
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
flav  Flavobacterium sp. CLA17
Pathway
flav03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:flav00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    HAV12_009865 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:flav03400]
    HAV12_009865 (ligD)
Enzymes [BR:flav01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     HAV12_009865 (ligD)
DNA repair and recombination proteins [BR:flav03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     HAV12_009865 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_M DNA_ligase_A_C RNA_ligase DNA_primase_S mRNA_cap_enzyme
Other DBs
NCBI-ProteinID: QSB29018
UniProt: A0A7Y3TEG0
LinkDB
Position
2333660..2336230
AA seq 856 aa
MSLLKYNEKRNFSDTAEPKGQVGRSENELIFVIQKHAASHLHYDFRLEMDGVLKSWAVPK
GPSLDPEIKRLAMMVEDHPYNYKDFEGSIPEGNYGAGNVIVWDNGTYLPADSDYKGTAED
KLQADLKKGHISFTLKGKKLKGNFSLVQLKGKQENAWLLIKKEDKYATTEDILKKDKSVI
SKLSLDVLEKKSAKEKALAKKKTTDIKSATTAEKKNKETKKSAIIFKKPMLASLTDKAFD
DPDWIFENKFDGYRTLAVIKEGGTELFSRNQISFTKNFQPITDELKKINHEAILDGEVVV
ENEAGKSDFQLLQNYLKTGKGKLKFYVFDILNLDGNDTTHLTLLERKELLEMLVSKSKFS
NILYSQHVPEKGIAFLEVAAKKESEGIIAKKADSPYTIGKRTGDWLKIKLSQQEEAIIIG
ITEPKNSRTYFGALLLGQYKEGILQFIGKCGTGFTQEVLKELHLKLAPYFTDKSPLEEKV
PLRDTIQWIKPKLICQVKFAEWTQDNHLRQPVYLGLRIDKNVKEVLFTGKDKDNIKGKEK
MEKTTTLESKSAPEKEGNFDLKAGKTTLHLTNQNKIYFPADGITKGDIVNYYNEVADLIL
PYLKDRPESMYRFPNGIEQSGFYQKDVDDDKIPSWLKTKKIFSESTNANVDYLICNDKAT
LLYMANLGCIDINPWNSTIKHIENPDWVVIDIDPEKDDFKEVVKTALMVKEVMDEFETAC
YCKTSGASGLHVYIPLGAKYDYDSVKIFAELIAHEVHSRLPETTSLERSIKKRNHKIYLD
YLQNRKGQTLAAPYSVRPKPGATVSTPLEWSEVNAKLSPSQFTIKNVLKRFEKKGDLWQP
VLGKGADIKAILKKSS
NT seq 2571 nt   +upstreamnt  +downstreamnt
atgtcacttctaaaatacaacgaaaagagaaactttagcgatacagctgaaccgaaaggg
caggtgggacgatctgaaaatgaattaatttttgtgattcaaaagcatgctgcttcccat
ttgcattatgattttcgattggaaatggatggcgtcctgaaaagctgggcagttcctaaa
gggccttcgctggatcctgaaataaaacgtctggcgatgatggtagaagatcatccgtac
aactataaagattttgaagggtctattcccgaaggaaattatggggccggaaacgtgatt
gtctgggataacggaacctaccttccggctgattcagattataaaggtactgccgaagat
aaattgcaggcagatcttaaaaaaggacatatcagttttactttaaaaggtaaaaaacta
aaaggaaatttttctttggtacaattaaaaggcaaacaggaaaacgcctggcttctgatt
aaaaaagaagataaatatgccacgaccgaagatattcttaaaaaagataaatcggttatt
tccaaacttagcctggatgttttagaaaagaaatctgccaaagaaaaagcattagctaaa
aaaaaaacgactgatataaagtcagccacaactgctgagaaaaaaaacaaagagactaaa
aaatccgctattatatttaaaaaaccaatgctcgccagtctgaccgacaaagcttttgat
gacccggattggattttcgaaaataaatttgatggttatcgcacgctcgctgttataaag
gaaggcggtacagaactttttagcagaaatcagatttctttcactaaaaattttcaaccg
ataaccgacgaattaaaaaaaataaaccacgaagccattctcgatggggaagtggtggtt
gaaaatgaagcaggaaaatcggattttcaactactgcaaaattatttaaaaacaggaaaa
ggaaaattaaaattttatgtttttgatattttgaacctggacggaaatgatacgactcat
ttgactttactggaacgaaaagagctgctggaaatgttagtgtctaaatctaaattttcg
aatattctgtattcccaacatgttcccgaaaaagggatcgcatttctggaagttgccgct
aaaaaagaaagtgaaggaatcatcgctaaaaaagcagacagtccgtatactattggaaaa
agaacaggagactggcttaaaataaaattatcccaacaggaagaagcgattataatcgga
attacggagcctaaaaattcacgtacctattttggagctttactactgggacaatataag
gagggcatcttacaatttattggtaaatgcggaaccggttttacgcaggaagtactgaaa
gaactacaccttaaattggcaccttattttacagataaatctcctttggaagaaaaagta
ccgctgcgggatactattcaatggatcaaaccaaaattgatttgtcaggttaaatttgcg
gagtggactcaggataatcatctgcgtcagcccgtatatcttggcttgagaatagataaa
aatgtaaaagaagtactttttaccggaaaggataaggataacattaaaggaaaagaaaaa
atggaaaagaccactacattagaaagtaaatcagctcctgaaaaagagggtaattttgat
ttaaaggcagggaaaacaaccctgcatttaaccaatcagaataaaatttattttccggct
gacggcataacgaaaggggacattgtcaattattacaatgaggttgccgatttgatttta
ccttatctaaaagaccgtccggaatccatgtaccgtttcccgaatggaatcgaacaatcc
ggtttttatcagaaagatgtcgatgatgataaaattccgtcctggctcaaaaccaaaaag
attttttcggaatctaccaatgctaatgtcgattacctgatttgcaatgacaaagcgact
ttgctgtacatggccaatctgggctgtattgacattaatccgtggaactctacgatcaaa
catatcgaaaatccggactgggtcgtgattgatattgatcccgaaaaggatgactttaag
gaagttgtaaaaaccgcactcatggtaaaagaggtgatggatgaatttgaaacagcatgt
tactgtaaaacttccggtgcttccggacttcatgtctatattccgcttggagcaaaatat
gactatgattcagtaaaaatatttgcggaacttattgcgcacgaagtccattccagatta
cccgaaacaacgagtttagaacgttcgatcaaaaaaagaaatcacaaaatctatctggat
tacctgcaaaaccgaaaagggcagacgcttgcagctccgtattccgtacggccaaaaccg
ggagcgacagtttctacgccattggagtggagtgaggtaaatgcaaaattatcgccttcc
caatttaccatcaaaaatgtattaaaacgtttcgagaagaaaggggatctttggcagccg
gttttaggaaaaggggccgatataaaagcaatactaaagaaaagttcctag

DBGET integrated database retrieval system