Flavobacterium sp. CLA17: HAV12_012555
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Entry
HAV12_012555 CDS
T11036
Name
(GenBank) UvrD-helicase domain-containing protein
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
flav Flavobacterium sp. CLA17
Pathway
flav03420
Nucleotide excision repair
flav03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
flav00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HAV12_012555
03430 Mismatch repair
HAV12_012555
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
flav03400
]
HAV12_012555
Enzymes [BR:
flav01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HAV12_012555
DNA repair and recombination proteins [BR:
flav03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HAV12_012555
MMR (mismatch excision repair)
Other MMR factors
HAV12_012555
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PcrA_UvrD_tudor
AAA_30
Viral_helicase1
ResIII
nSTAND3
Motif
Other DBs
NCBI-ProteinID:
QSB25207
UniProt:
A0A7Y3TFC5
LinkDB
All DBs
Position
complement(3079459..3081795)
Genome browser
AA seq
778 aa
AA seq
DB search
MHKYIDQLNEAQREPVLQKDGPMIIIAGAGSGKTRVLTIRIAYLMHQGVDAFNILSLTFT
NKAAREMKHRISDIVGPAEAKNLWMGTFHSIFARILRSESEHLGYPSNFTIYDSQDSQRL
ISSIIKEMQLDRDVYKPKQVLGRISSYKNSLITVKAYFNNPELQEADAMAKKPRLGEIYQ
QYVDRCFKAGAMDFDDLLLKTNELLTRFPEVLSKYQNRFRYILVDEYQDTNHSQYLIVRA
LSDKFQNICVVGDDAQSIYAFRGANINNILNFQKDYEGVKTFRLEQNYRSTKNIVEAANT
IIDKNKTKLDKIVWTANDFGPKIKVHRSLTDAEEGRFVTSTIFEQKMQNQLHNGSFAILY
RTNAQSRAMEDALRKRDIPYRIYGGLSFYQRKEIKDVLCYLRLVINPKDEEALIRVINYP
ARGIGDTTVEKLTIAANHYKRSIWEVMVNIDKIDLKLNSGTKQKLNDFVTMIQSFQVIDQ
NQDAFYITDYVAKKTGLVQELKKDATPEGMAKIQNIEELLNGIKDFTEGQKEIDGARGAL
SEFMEDVALATDLDKDTSDEDRVALMTIHLAKGLEFPHVFVVGMEEDLFPSAMSMSTRSE
LEEERRLFYVALTRAEHQAYLTYAQSRYRWGKLTDSEPSRFVEEIDPQYLEYLTPAESNY
RYKPMIDSDIFGDIDKSKLRLAKPVGGTPPKYITDNEPKPDLNIRKLKPVAGNNPNISAP
NLFDSKLTVGNIVMHERFGKGEVVNLEGVGPDKKAEIKFEVGGIKKLLLRFAKLDVVG
NT seq
2337 nt
NT seq
+upstream
nt +downstream
nt
atgcataaatatattgaccagctaaacgaagcacaaagagaacccgttttacaaaaagac
gggccaatgattattattgctggtgcaggttcgggaaaaacacgtgttttaaccatcaga
atcgcttatttgatgcatcagggcgttgacgcgtttaatattttgtcgcttacttttacg
aataaggcagctcgtgaaatgaagcacaggatctcagatattgtaggaccagccgaagca
aaaaacctttggatgggaacatttcactcgattttcgcacgtattctgcgttcagaatcg
gaacacttgggatatccttccaattttaccatttatgattcacaggattcccagagactg
atttcttccattatcaaggaaatgcagctggatcgtgatgtttataaaccaaagcaggtt
ttaggccgaatttcaagttataaaaacagtctgattacggtaaaagcgtatttcaataat
cccgaattgcaggaagccgatgccatggcaaaaaaaccaaggctaggagaaatctaccag
cagtatgtagacagatgttttaaggccggagcaatggattttgatgatttgttattgaaa
accaacgaattgctaacccgttttccggaagttttatccaaatatcaaaatcgtttccgt
tatattctggtagatgagtaccaggataccaaccactcccaatatttgattgtcagggct
ttatcagataaatttcaaaatatttgtgttgtaggagatgatgcgcagagtatttatgcc
ttccgtggagcgaatatcaataacattttgaatttccaaaaggattacgaaggggtaaaa
accttcagactggaacaaaattaccgatctacaaaaaatattgttgaagcagcgaatacg
atcattgataaaaataaaacaaaactggacaaaatcgtttggacagcgaatgatttcgga
ccaaaaataaaagtacaccgcagtttaacagatgccgaagaaggtcgttttgtgaccagt
accattttcgagcaaaaaatgcagaatcaactgcataatggttcttttgcaattttatat
cgtaccaatgcacaatcacgtgcgatggaggatgcccttagaaaacgtgatattccgtac
aggatttatggaggtttatccttctatcaacgtaaggaaattaaggatgtactttgttat
cttcgactcgtgattaatccgaaagatgaagaagcattaattcgtgtgatcaattatccg
gcacgtggaattggggacacaacagttgaaaaactgactattgcagccaatcattacaaa
agatcgatttgggaagtgatggtcaatattgataaaattgacctgaaactgaattcggga
acaaaacaaaagctaaacgattttgtgacaatgattcagagttttcaggttattgatcag
aatcaggatgctttttatattaccgattatgtagctaaaaaaaccggtttagttcaggaa
cttaaaaaagacgctactcccgaaggaatggctaaaattcagaatatcgaagaactttta
aacggtataaaagattttacggaagggcagaaagaaattgatggtgcaagaggagctttg
tctgaatttatggaagatgtagcacttgccacagatttagataaagatacaagcgatgaa
gatcgtgtggccctgatgaccattcacctggcaaaaggacttgaatttcctcatgtattc
gtagtcggaatggaagaagatttgtttccaagcgccatgagtatgagcacaagaagtgaa
ttggaagaagaaagacgtttgttttatgtggcattgacacgtgcggaacatcaggcctat
ctgacctacgctcaatcacgataccgctggggaaaactaacagatagcgagccatcccga
tttgtggaagaaattgatccgcaatatttagagtatttaacacccgcagaaagtaattat
cgctacaaaccaatgattgacagcgatatttttggagatattgataaatcgaagttacga
ttggcaaaaccggtaggaggaactccgcctaaatatataacagataacgagcctaaaccg
gatttgaatattcgaaaattaaaaccagttgcaggtaataacccaaatatcagcgctccc
aatttatttgacagtaaattaactgttggaaatattgtcatgcacgaacgttttggtaaa
ggagaagtcgttaatctggaaggtgtagggccagataaaaaagcagaaatcaaatttgaa
gttggcggaatcaaaaaacttttactacgatttgctaagttggatgtggtaggataa
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