Flavobacterium sp. CLA17: HAV12_014310
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Entry
HAV12_014310 CDS
T11036
Name
(GenBank) GIY-YIG nuclease family protein
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
flav Flavobacterium sp. CLA17
Pathway
flav03030
DNA replication
flav03430
Mismatch repair
flav03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
flav00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HAV12_014310
03430 Mismatch repair
HAV12_014310
03440 Homologous recombination
HAV12_014310
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
flav03032
]
HAV12_014310
03400 DNA repair and recombination proteins [BR:
flav03400
]
HAV12_014310
Enzymes [BR:
flav01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
HAV12_014310
DNA replication proteins [BR:
flav03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
HAV12_014310
DNA repair and recombination proteins [BR:
flav03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
HAV12_014310
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
GIY-YIG
DEDDh_C
GIY_YIG_2
Motif
Other DBs
NCBI-ProteinID:
QSB25544
LinkDB
All DBs
Position
3477506..3478888
Genome browser
AA seq
460 aa
AA seq
DB search
MKKMQYAVVDIETTGGNASGSRITEIAIIIHDGTKVIDRFETLINPQKEIPLPIFALTGI
NNEMVQHAPIFDDIAEKVLEMLTNRIFVAHNVNFDYSFVRHEIEKAGFKWTARKLCTVRA
ARKIKPGLSSYSLGNLCNSLDIPVKDRHRAGGDAAATVILFERLLAWDDEGVISKMIKNT
AQDQRLPPNLPPNDFEQLPEKPGVYYFYNQLKKVIYVGKAINIQKRVGSHFSGHNINPQR
QNFLRDIHSISFEVCATELMALLLECTEIKKLWPAYNRALKRFEAKYGLYQYEARNGYRY
LAIGKMGKFQDSIEVFNSEFAAINLLRSLSEQFDIDYRFCKYSKPELGEFLPAKDLSELP
DAALHNSKIETAIDFFLNSRSTFAIIDKGRSAEERSCIWVEKGHFYGMGYITSDVAITEP
SQIKDFVTPYASNQYIMQLIDGYAKKYPRKVFFNRNGWIE
NT seq
1383 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaaaatgcaatatgccgtagtagatatcgaaaccacaggcggtaatgccagtggc
agccggattacggaaattgccattattattcacgacggaaccaaggtaatagaccgattt
gaaacactcataaatccacaaaaggagattccgcttcccatttttgccttaaccggaatt
aacaatgaaatggtacagcatgccccgatcttcgatgatattgccgaaaaagtgctggag
atgctgaccaatcgaatcttcgttgcccataacgtcaacttcgattattcctttgtgcgt
catgagatcgaaaaggcaggttttaaatggaccgcccgaaaactttgtactgttcgcgct
gcccgaaaaattaaaccgggcctgagttcgtacagtctgggcaatctttgcaattcactg
gacatccccgtaaaagacaggcaccgcgccggtggagacgcagctgcaacggtgatctta
ttcgaacgattattagcatgggatgacgaaggcgtgatttcaaaaatgatcaaaaatacg
gcacaggaccagcgtttgccgcctaacctgccgccgaacgattttgaacaattaccggaa
aaaccgggcgtgtattacttctacaatcagctcaaaaaagtaatttacgtcggaaaagcc
attaacatccaaaaaagggttggttctcatttcagcggtcataatattaatccgcaaagg
caaaacttcctgcgggacattcacagtatttcctttgaggtctgcgccaccgaactgatg
gcactgcttttggaatgtaccgaaatcaaaaagctctggccggcctacaacagggcactt
aaacgttttgaagcaaaatatggtctctatcaatatgaagcccgcaatggctatcggtat
ctggctataggaaaaatgggtaaatttcaggacagcattgaagttttcaatagcgaattt
gctgccataaacctattgcgctccctctccgaacaattcgatattgattatcgattctgt
aaatattcaaagccggaactcggagaatttctgccggccaaagatctatcggagttaccg
gatgcagcgttacacaattcgaaaattgaaactgcaatagactttttcttaaacagcaga
tcgactttcgccattattgataaaggcagatctgctgaggaacgcagttgtatctgggtc
gaaaaaggtcatttttatggcatgggatacatcacttcagatgttgcgattacagaacct
tcccaaataaaagatttcgttacgccttacgccagcaatcaatacatcatgcagctcatt
gacggttatgccaagaaatatccgcgtaaagttttttttaatagaaatggttggattgag
tag
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