Flavobacterium sp. CLA17: HAV12_022395
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Entry
HAV12_022395 CDS
T11036
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
flav Flavobacterium sp. CLA17
Pathway
flav03030
DNA replication
flav03430
Mismatch repair
flav03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
flav00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HAV12_022395 (dnaE)
03430 Mismatch repair
HAV12_022395 (dnaE)
03440 Homologous recombination
HAV12_022395 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
flav03032
]
HAV12_022395 (dnaE)
03400 DNA repair and recombination proteins [BR:
flav03400
]
HAV12_022395 (dnaE)
Enzymes [BR:
flav01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
HAV12_022395 (dnaE)
DNA replication proteins [BR:
flav03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
HAV12_022395 (dnaE)
DNA repair and recombination proteins [BR:
flav03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
HAV12_022395 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
RNase_T
Intimin_C
SRP14
Motif
Other DBs
NCBI-ProteinID:
QSB27074
UniProt:
A0A7Y3X4F9
LinkDB
All DBs
Position
complement(5423236..5427774)
Genome browser
AA seq
1512 aa
AA seq
DB search
MYLIFDTETTGLPKRWDAPITDSDNWPRCIQIAWQLHDEMGQLIEHQDYLVKPDGFNIPY
DAERIHGISTELAEADGITLAEVLEKFNIVLGKTKFIVGQNLGFDVNIMGAEFHRLGVDS
PMASMPVLDTCTEVTASLLQLPGGRGGRFKLPTLTELHSYLFNKPFAEAHNATADVEATT
RCFLELIRREVFTKEELDVPKDYFKEFQNRNPQEFPLIGLKHINLKAASDKIREQLRALE
SDDKQTVVSDSDRADFKAAKYAHLHNHTQFSVLQSTIGIANIVSATAKNGMPAVAMTDTG
NMMGAFHFVSAVMNHNKAASAKNKALVEAGEEPTETEMKPIVGCEFNVCDNHLDKSKKDN
GNQLVLLAKNKNGYHNLAKMSSIAFTDGFYYVPRIDRAIVEKYKEDIMVLSGNLYGEIQS
KILNVGENQAEEALIWWKEQFGDDFYLEVMRHNQEDENRVNKTLIEFSQKHNVKLIATNN
TYYLNKEDANAHDILLCVKDGEKQATPIGRGRGYRYGLPNQEYYYKSQEEMKKLFADLPD
AIINIQEIVDKVEIYSLYRDVLLPKFDIPEEFVVVEDEADGGVRGENKYLRHLTMVGAKK
RYGEITESIQERLDFELLTISNSGYPGYFLIVQDFIAEARNMDVSVGPGRGSAAGSAVAY
CLGITNIDPIKYDLLFERFLNPDRVSMPDIDIDFDDEGRGRVMDYVINKYGKNQVAQIIT
YGKMATKSAIRDTARVLDLPLFEADRIAKLIPAMMPSKWNLARFISENEDEVKKALRSDE
FDNVKELIAIANEDDLAGETIQQAKILEGSMRNTGIHACGVIITPSDITNFVPVTTAKDS
DLYVTQFDNSVAESAGLLKMDFLGLKTLTLIKDTVKLVKYRNGIDLDPDTFPIDDVETYA
LFQRGETVGIFQYESPGMQKYMKDLKPTVFGDLIAMNALYRPGPLEYIPSFVRRKNGEEE
IKYDLDACEEYLGETYGITVYQEQVMLLSQSLADFTKGEADVLRKAMGKKQKDVLDKMKP
KFVEQAVKKGHDAKVLEKIWKDWEAFASYAFNKSHSTCYAWIAYQTAYLKAHYPAEYMAA
VLSNNMNDIKQVSFFMEECKRMGLQVLGPDVNESFYKFTVNDEYAVRFGMGAIKGVGSGA
VATIVENRKEGKYKSIFDLAKRIDLRAANKKAIENLALAGGFDSFEGTTRAQYFHDDGDG
ITFYEKAIRYGSKFQENENSSQVSLFGESSEVQIAEPVVPPCEDWSTMEKLAKEKEVVGI
YISGHPLDDFRFEMKYFCNARLEALKSMNEYVGKNLNFAGIINNVQHRVAKNGKGWAVFN
LEGYDESYEFKIFGEEYLKFRHFLIQNNFAFLKIVIKDGWVNHDTGKKSDPRMQFVEIRQ
LQDILEAFAKKLVLLLNIKDLQTEFIHKLSHLFNENKGDNTVTFEIMELENIKRLVAVET
PTDFEGTDDAVFEQENDSDDTPLEETKIQEVNEVEEIKVVTKLTMPSRRLKIKISTELLQ
ELEKMQVNFKLN
NT seq
4539 nt
NT seq
+upstream
nt +downstream
nt
atgtatttaatattcgataccgaaacaaccggattaccaaaacgctgggatgctcccata
accgattctgataactggccgcgctgtatacagatcgcatggcagctgcatgacgaaatg
ggacaattgatcgagcatcaggattatttggtaaaaccggacggattcaacattccgtat
gacgcagaacgtattcacggaatctcgactgagcttgcagaagcggatggaattacgctg
gccgaagttttggagaaattcaatattgttttaggcaaaaccaaatttattgtcggacag
aatttaggtttcgacgttaacattatgggagccgaattccatagattgggagttgattct
ccaatggcttcaatgccggttctggatacttgtacagaggttactgcttctttattgcag
cttcccggaggtcgtggaggaaggtttaagttaccaaccctgacagaattacacagttat
ctttttaataaaccgtttgcagaagcacacaacgcaaccgccgacgttgaagcaactacg
cgttgtttcctggaattaataagaagagaggtttttaccaaagaagaactggatgttccg
aaggattattttaaggaatttcaaaatagaaatccacaggaatttccgctaattggtcta
aaacacatcaacttaaaagcagcatctgataaaatcagggagcaattaagagctttagaa
tcagatgataaacaaacggtagtttcagattctgacagagcagattttaaagcggcaaaa
tatgcgcatttacacaatcacacccagttttcggttttacaatctactataggaattgcc
aatattgtttcggctacagccaaaaacggaatgccggccgtggcaatgaccgataccgga
aacatgatgggggcttttcactttgtgagcgccgttatgaatcacaacaaagcagcttct
gcgaaaaataaagctttggttgaagctggagaagagccaacagaaacggagatgaaacca
atcgtaggttgcgaattcaatgtttgcgacaaccatttggataaaagtaaaaaagacaat
ggtaatcagttagtattgcttgctaaaaacaaaaacggttatcataatctggccaaaatg
tcgtcgattgcgtttacggacggattttattatgttccgagaattgaccgcgcgatcgta
gaaaaatataaagaggatatcatggttttgtccgggaatttatatggagaaatccagagt
aaaatcctgaacgtcggtgaaaaccaagccgaagaagccttgatttggtggaaagagcaa
tttggcgatgacttttatcttgaagtcatgcgccacaatcaggaagatgagaatcgtgtt
aataaaaccctgattgaattttctcagaagcacaatgtcaagttaattgccacaaacaat
acctattatttaaataaagaagatgccaatgcacacgacattttattgtgtgtaaaagac
ggagaaaaacaagcgacaccaattggccgtggtcgtggctatcgttacggattacccaat
caggaatattattataagtcgcaggaagagatgaaaaaactctttgccgatttgccggat
gcgattatcaatattcaggaaattgtcgataaggtggagatttactcgctttatcgcgat
gtattgcttccgaaatttgatattccggaggaatttgtagtagttgaagatgaagcggat
ggcggtgtaagaggagaaaataaatacctgagacaccttacgatggtgggggcaaaaaaa
cgatatggagaaattacggaatctattcaggaacgtttggattttgagttactgaccatt
tcgaattccggatatccgggttactttttgattgtacaggatttcattgccgaagcccga
aatatggacgtttcggtaggaccgggacgtggatctgcggcgggatctgccgtagcctat
tgtttaggaattacaaatattgacccgattaagtacgatttgctttttgagcgtttcctg
aatccggatcgtgtatccatgcccgatattgatatcgattttgatgatgagggccgtgga
cgcgttatggattatgtaatcaataaatacggtaaaaatcaggtggcgcaaattattacc
tatggtaaaatggccaccaagtcagcgattcgtgatacggctcgtgtactggatttacca
ttgtttgaagccgacagaattgcaaaactgattccggcgatgatgccttcaaaatggaat
ctggcgcgttttatctctgaaaacgaagatgaggttaaaaaagcccttcgttcggatgag
tttgataatgtaaaagaattaatcgccattgccaatgaagatgatttggcaggagaaacc
attcaacaggcaaaaatcctggagggatcgatgcgaaataccggaattcacgcctgtggt
gtaattattacgccatcggatattacgaatttcgttcccgttaccaccgcaaaagattct
gatttatatgtaacgcagtttgataactcggttgcagaaagtgctggattactaaaaatg
gacttcctgggtctgaagacccttaccttaataaaagataccgttaaactggtaaaatat
agaaacggaattgatttggatccggatacatttccgattgatgatgttgagacgtatgcg
cttttccaaagaggagaaacagttggaatcttccagtacgagtcgcccggaatgcagaaa
tacatgaaggacctgaagccgacggtttttggggatttaattgccatgaacgccttgtat
cgtccgggacctttagaatatattccgtctttcgtaagaagaaaaaatggggaagaagaa
atcaaatacgatttagatgcctgtgaggaatatctgggagaaacctatggaattacggtg
tatcaggagcaggtaatgcttttgtcgcaatcgctggcagactttacaaaaggtgaagcc
gacgttttgcgtaaggcgatgggtaaaaaacaaaaagacgtactggataaaatgaagcct
aagttcgtagagcaggcggtaaaaaaaggtcatgacgcaaaagttttagagaaaatctgg
aaagactgggaagcctttgcgagttacgcctttaacaaatcacactcgacttgttatgcc
tggattgcgtatcagacggcttatttaaaagcacattatccggcagaatatatggctgcg
gttctttcgaataatatgaatgatatcaaacaagtatccttttttatggaagaatgcaaa
cgaatgggattgcaggttttaggaccggatgtaaacgagtcgttttataaattcaccgta
aatgatgaatatgcggtacgttttggaatgggtgctataaaaggtgtcgggtccggagct
gtggcaacaattgtagagaatagaaaagaagggaagtataaatcgatttttgatttggcg
aagcgtatcgatttgcgtgcggccaataaaaaagcgatcgaaaatctggctttggccggt
ggtttcgattcgtttgaaggaacaacaagagcacaatattttcatgatgatggtgacgga
attaccttttatgaaaaagcaattcgttacggatctaagtttcaggaaaatgaaaattca
tcgcaggtaagtttgttcggggaatcaagtgaagttcagattgccgagcctgtcgttcct
ccatgtgaagactggagcacgatggaaaaactggccaaggaaaaagaagtggttggaatt
tatatttccggacatccgctggacgattttagatttgaaatgaaatacttctgcaatgcc
cgattggaagcgctaaaaagtatgaatgaatatgtaggtaaaaatctaaattttgccgga
atcataaataatgtgcagcatcgtgttgctaagaacggaaaaggctgggctgtatttaat
ttagaaggatatgatgaaagttatgagtttaagatttttggcgaggaatacttaaagttt
cgccatttcctgattcagaataatttcgctttccttaaaatagtaataaaagatggctgg
gtaaatcatgataccggtaaaaaatcggatccaagaatgcagtttgttgagatcaggcaa
ttacaggatattctggaagcctttgccaaaaaattggttttattgctgaatattaaagac
ctgcaaactgaatttattcataaactgagtcatttatttaatgagaataaaggagataat
actgtgacttttgaaatcatggaattagaaaatataaaacgtttggttgcggttgaaact
ccaactgattttgaaggaactgatgatgctgtttttgaacaagaaaacgatagtgacgat
accccgctggaagaaactaaaattcaggaagtaaatgaagttgaagaaattaaggtcgtg
accaaattaacgatgccaagtcgccggttaaagattaaaatttcgacagaactattacag
gaattagagaaaatgcaggtaaatttcaagttgaactaa
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