Flagellimonas sp. CMM7: LV704_01710
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Entry
LV704_01710 CDS
T08590
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
flb
Flagellimonas sp. CMM7
Brite
KEGG Orthology (KO) [BR:
flb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
flb03009
]
LV704_01710 (rlmD)
Enzymes [BR:
flb01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
LV704_01710 (rlmD)
Ribosome biogenesis [BR:
flb03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
LV704_01710 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
Met_10
Methyltransf_25
Cons_hypoth95
MTS
Methyltransf_15
PCMT
FtsJ
Methyltransf_11
N6_N4_Mtase
TRAM
PrmA
Methyltransf_2
RrnaAD
UPF0020
DUF5071
Motif
Other DBs
NCBI-ProteinID:
UII80245
LinkDB
All DBs
Position
347764..349176
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AA seq
470 aa
AA seq
DB search
MRKKRSRLMFENVEVIDAGAKGKSVGKAPDGRIIFLSNAVPGDVVDVMTTKKRKAFFEGI
ATKFHTLSERRTTPKCEHFGVCGGCKWQHMAYEHQLHFKQKEVENNLKRIGNLELPETTP
ILGSKEHYFYRNKMEFSFSSSRWLTQEEIDSESQIEDRNALGFHIPGMWDKILDIKKCHL
QEDPSNAIRLEVKNFASKNGLAFFNPRQQQGLLRTMMLRTASTGEIMLLIQFFEDNQEQR
ELLLNHIEQTFPEITSLLYVINQKQNDTIYDQEVVCFAGRDHIFEEMEGLRFKINAKSFY
QTNSEQAYELYKVTRDFANLTGNELVYDLYTGTGTIAQFISKKAKKVIGVESVPEAIEDA
KNNALHNNISNVEFFVGDMKKVFNSSFIEQHGQPDIIITDPPRDGMHKLVVEQLLQIAPE
KIVYVSCNSATQARDLALLDEKYQVTRVQPVDMFPQTHHVENVVLLEKRV
NT seq
1413 nt
NT seq
+upstream
nt +downstream
nt
atgcgcaaaaaaagaagtcgactaatgtttgaaaatgtcgaagtaatagatgctggagca
aaaggaaagtcagttggaaaagctcccgatggtagaattatatttctatccaatgccgtg
cctggagatgttgtggatgtaatgaccactaaaaagagaaaagctttttttgaaggtata
gcaacaaaatttcataccctatccgaaagaagaacaacacctaaatgcgaacattttgga
gtttgtggggggtgtaaatggcagcacatggcatatgaacatcaactccattttaaacaa
aaagaagttgaaaacaacttaaaacgtattggaaatcttgaactgcccgaaacaacacca
attcttggttctaaggaacactatttttatagaaacaagatggagttttcattttcgagc
agtcgttggttgactcaagaagaaattgattctgaatctcagattgaagacagaaatgct
ttagggtttcatattcccggtatgtgggataaaattctggatattaaaaaatgtcactta
caagaggacccttccaatgcaattaggttggaagtcaaaaatttcgcgagtaagaatggg
cttgcattttttaaccctagacaacaacaagggctattgcgcactatgatgcttagaaca
gcttctacaggtgaaataatgcttcttatccaattttttgaggataaccaagaacaacgt
gaactgctattgaaccatatagaacaaactttcccagaaatcacttcattgctttacgtc
atcaaccaaaaacagaatgacactatttatgatcaagaggtagtttgctttgctgggcgg
gaccacatttttgaagaaatggaggggttgcgtttcaaaataaatgccaagtcattttat
caaacaaattcagagcaagcctatgaactttataaggtaacacgtgattttgcaaatctt
accggaaacgaacttgtctatgacctatataccggaacaggaaccattgctcaatttata
tctaaaaaagcgaagaaagtaataggggtggaatcagtgccggaagcaattgaagatgcg
aaaaataatgcccttcacaacaacatttccaatgtggaattttttgtgggtgatatgaaa
aaagtctttaatagttcattcatagagcagcatggacaaccagacatcataataaccgac
cctccgcgagatggtatgcacaagttagtggtagaacaacttttacaaatagctccagag
aaaatagtgtatgtaagttgtaacagtgcaacccaggcaagagatttagctcttttagac
gaaaaatatcaggtgacaagagtacagccggtagacatgtttccgcaaacacaccacgta
gaaaatgttgtacttttggaaaaacgggtatag
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