Flagellimonas sp. CMM7: LV704_05190
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Entry
LV704_05190 CDS
T08590
Symbol
rpoN
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
flb
Flagellimonas sp. CMM7
Pathway
flb02020
Two-component system
flb02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
flb00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
LV704_05190 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
LV704_05190 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
flb03021
]
LV704_05190 (rpoN)
Transcription machinery [BR:
flb03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
LV704_05190 (rpoN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_CBD
Sigma54_DBD
Sigma54_AID
DUF3874
AbiTii
MarR
HTH_12
HTH_21
Motif
Other DBs
NCBI-ProteinID:
UII80908
LinkDB
All DBs
Position
1138779..1140236
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AA seq
485 aa
AA seq
DB search
MLKQHLQFKLSQKLSPQQIQLMKLIQLPTQAFEQRLKQELEENPALESGKAESETMDEGF
EDTYDDSADSETIAAEEINIDDYLSDDEIPDYRTQTSNYSPDDDEKSIPYASGTSFNQYL
INQLNTVYLDDEEWAIAEFLVGSVDESGYIRRPLSDIMDDLAFTQNIYVEENKINSVLKM
VQELDPPGVAARSLGECLIIQLKRKEKNPAVELAISILEKSFEQFTKKHYSKLLQKHHIN
EDQLKDAISEIEKLNPKPGGSYAGNTRIIEHIVPDFSIKIVEGELELTLNGRNAPELHVS
RDYNNMLEGYKNSKEKSKSQKDTVLFIKQKLDAAKWFIDAIKQRQQTLYITMSTIMNYQK
DYFLSGDERKLRPMILKDIADQIHMDVSTVSRVANSKYVDTPYGTKLIKEYFSESMKNEQ
GEDVSTKEIKKILETVIGEELKKKPLTDDKLAKILKERGYPIARRTVAKYREQLGIPVAR
LRKQI
NT seq
1458 nt
NT seq
+upstream
nt +downstream
nt
atgctaaaacaacatctacagtttaagctttcccaaaagttgtctccgcagcagatacaa
cttatgaagctaattcagctgcctacacaggcttttgaacaacgcttaaaacaagaactc
gaggaaaatcctgctctggagagtggaaaagccgaaagtgaaaccatggatgaaggtttt
gaggatacttacgatgatagtgctgatagcgagaccattgcagcagaagaaatcaatatt
gatgattatttaagtgacgatgagattcccgactatagaacacagacaagcaactatagt
ccagacgatgatgaaaaaagtattccgtatgcttctggaacttcttttaaccaatacttg
atcaaccaacttaatacggtttatctagatgatgaagagtgggccattgcagagtttttg
gtgggcagtgtagatgaaagtggttatatacgcagaccgctttccgatattatggatgat
cttgcttttacccagaatatttatgttgaggaaaataagattaatagtgtccttaaaatg
gttcaggaattggacccgccaggagtagctgccagatcactgggggaatgccttattatt
cagctgaagcgtaaggagaaaaatccagctgttgaacttgccatttccattctggaaaaa
tctttcgagcaattcactaaaaaacattattccaaattacttcaaaagcatcatattaat
gaagatcaacttaaagatgctatttcagaaattgaaaaactgaaccctaaacccgggggg
tcttatgctggtaacacaagaatcattgaacatattgttcctgatttctccattaagata
gttgaaggtgaattggaattaaccctaaacggtagaaacgcccctgaacttcatgtttct
agagattacaacaatatgttggaagggtataaaaattctaaggagaaatcaaaatcccaa
aaagataccgttctctttataaaacaaaaattagatgcggcaaagtggttcatagatgct
attaaacaacgtcagcagaccttgtacataaccatgagcaccatcatgaactatcagaaa
gattattttttaagtggtgatgaacgcaagctacgccctatgatcttaaaggacattgct
gatcagatacatatggatgtctccacagtgtcaagagttgccaatagtaaatatgttgat
acgccttacggaacaaaattgattaaggagtacttttctgagtctatgaagaatgaacaa
ggagaagacgtatcaacaaaagaaattaaaaagatactggaaactgttattggagaagag
ctaaagaaaaaacctttaacggacgataaactggcaaaaattctgaaagaacgaggctat
ccaattgcaagacgaactgttgctaaatatagagagcaattgggaatcccagtggctagg
ctaagaaagcaaatttaa
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