Flagellimonas sp. CMM7: LV704_05945
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Entry
LV704_05945 CDS
T08590
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
flb
Flagellimonas sp. CMM7
Pathway
flb03030
DNA replication
flb03430
Mismatch repair
flb03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
flb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LV704_05945 (dnaE)
03430 Mismatch repair
LV704_05945 (dnaE)
03440 Homologous recombination
LV704_05945 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
flb03032
]
LV704_05945 (dnaE)
03400 DNA repair and recombination proteins [BR:
flb03400
]
LV704_05945 (dnaE)
Enzymes [BR:
flb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
LV704_05945 (dnaE)
DNA replication proteins [BR:
flb03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
LV704_05945 (dnaE)
DNA repair and recombination proteins [BR:
flb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
LV704_05945 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
RNase_T
tRNA_anti-codon
HHH_3
Motif
Other DBs
NCBI-ProteinID:
UII81054
LinkDB
All DBs
Position
1306153..1310538
Genome browser
AA seq
1461 aa
AA seq
DB search
MYLIFDTETTGLPKRWNAPITDTDNWPRCIQIAWQLHDKLGNLVEHQDMLVQPDGFNIPY
EAEQIHGISTALAEQDGVPLSEALELFNEALSKAKFVVGQNVDFDVNIMGCEFHRLGVEN
SLTSLPVLDTCTEATAELCRIPGGRGGKFKLPTLTELHEYLFGEPFAEAHNATADVEATT
RCFLELVRKKHFSINELDVQPDYFEHFSEANPQVISLIGLKHINLKKASKAISDALWAED
TGEISEAEINENVESLAEASFVHLHNHSQFSVLQSTINIKDLVKSTAQNGMSAVALTDHA
NMMGAFHFVKEVKAHNKIVKEKNAELTTNGDAPAEKEITPILGCEFFVCDDHTNKNVKDY
GYQIVLLAKNKNGYLNLAKMSSIAYTDGFYYVPRIDRKIVEQYKEDVIALTGNLYGEVPN
KILNVGEKQAEEALLWWKDQFGDDLYMEMMRHGQEDEDRVNQVLVPLAKKHQVKLVATNN
TYYCDKKDAEAHDILLCVKDGEKQTTPIGRGRGYRYGLPNQEYYYKSSDEMKTLFKDVPE
AILNVQEVVDKVEPFDLARDVLLPKFDIPQKFKVQEDETDGGKRGENSYLKHITYEGAAK
RYDEITDEITERIDFELKTIENSGYPGYFLIVEDFIREARNMDVSVGPGRGSAAGSVVAY
CLWITNIDPLKYDLLFERFLNPDRVSMPDIDIDFDDEGRGRVMDYVINKYGANQVAQIIT
YGTMAAKSSIRDTARVLDLPLNDADRIAKLIPTMSKLNKIFGVEESELKKKFRSDDLEKV
HELLNISEGDDLEGQTVKMARVLEGSLRNTGIHACGVIITPDDITNFVPVATAKDSDLYV
TQFDNSVVESAGLLKMDFLGLKTLTLIKDTVKIVKARTGVELVPDDFPLDDEKTYELFQR
GDTIGIFQYESPGMQKHMKNLKPTVFDDLIAMNALYRPGPMEYIPSFIARKHGDEEITYD
LPDMEEYLKETYGITVYQEQVMLLSQKLAGFSKGDADVLRKAMGKKIFALLQKLRPQFLD
GGEKNGHPRDVLEKIWKDWEAFASYAFNKSHSTCYAFIAYQTAYLKAHYPAEYMAAVLSN
NMNDIKQVTFFMEECKRMGLEVLGPDVNESYYKFAVNQSNAVRFGMGAIKGVGRSAVETI
VENRKKDGPYKSVFDLAKRVELRAANKKSFENLALAGGFDSFGDTHRSQYFHDEGDGISF
LEKVIKSAAKYQENKNSSQMDMFGGMSEAQIAEPVVPPCEDWGTMEKLRREKEVVGIYIS
GHPLDDFKKEITAFCNSNVSAFSNLDHYVNHELTVAGVITDVQHRISKNGKGWGLFTLED
YTDTHEFRIFGEEYLKFRHFLMINSFVHVKAFVREGWTNRETGKKGDPRLQFNDFKQLQD
VMDSYAKKLTIKLDIDRLQEKRIQVLKDTLISHKGDHTLNFVVYEMEDEIKLNLSSRKQK
VKINSELLSALEENEIHYKLN
NT seq
4386 nt
NT seq
+upstream
nt +downstream
nt
atgtacctaatcttcgatacggaaaccacaggcttacccaagcgatggaatgcaccaatc
actgatacggataattggccgcgttgcatccagattgcatggcaattacatgataaattg
gggaatttagtagagcatcaagatatgttggtgcaacctgatggcttcaacattccatat
gaagcagaacaaatccatggtatttccacagctttggccgaacaagatggtgtgccttta
agtgaagccctggaacttttcaatgaagcgctttccaaagcaaaatttgtggtaggtcaa
aatgtggattttgatgtcaatatcatgggatgcgaattccaccgtttgggtgttgaaaac
tccctaacctcacttcctgttttggacacctgtaccgaagctacagcagagctttgtaga
attcccggtgggcgtggtggtaaatttaaactacctacacttactgaacttcacgaatac
ctttttggagaaccttttgcagaagcgcataacgcaacggcggatgtggaagctaccaca
agatgttttttagaactagtccgtaaaaaacatttttctatcaatgaactggatgtacaa
ccagattattttgagcatttttctgaggctaatccacaggtaatttcgcttattggacta
aagcacatcaatcttaaaaaagcatccaaggccatttcagatgccctttgggcagaagat
accggtgaaatctccgaagcggaaatcaatgagaatgttgaaagtctggcagaggcatcc
tttgtacatctgcataatcattcccagttctccgttctacaatccactataaatatcaag
gatctggtaaagtcaactgcacaaaatgggatgtcagcagttgctttgaccgatcatgca
aatatgatgggtgcctttcattttgtaaaagaggtaaaagctcacaacaaaattgtaaaa
gagaaaaatgctgaactaaccactaatggagatgctccagcagaaaaagaaattacccca
attctaggctgtgaattttttgtttgcgatgaccacaccaataaaaatgtaaaagattat
gggtatcagatagtcctacttgccaaaaataaaaatggttacctcaacctggccaaaatg
tcttccattgcatatacagatgggttttactatgtccccagaatcgatagaaaaattgtt
gagcaatacaaagaggatgtcattgctcttaccggaaacctctatggggaagtacccaat
aaaatactaaacgttggtgaaaagcaggcggaagaagctttgctttggtggaaagatcag
tttggcgatgatttatacatggaaatgatgcgtcatggtcaggaagatgaagaccgtgta
aaccaagttttggttccattggccaaaaagcatcaagtaaaactggtcgctacgaacaat
acttattattgtgataaaaaagatgctgaagcccatgatattttactatgcgttaaggat
ggcgaaaaacaaaccaccccaataggaaggggccgcggatatcgctatggattgcccaat
caagaatattattataagtcttctgatgaaatgaagactttgtttaaagacgttccagaa
gctatcttaaatgttcaagaggttgtggacaaggtggaaccttttgatttggcaagagat
gttttgcttccaaaatttgatattccgcaaaaattcaaagtacaagaggatgaaactgac
ggcggtaaacgtggtgaaaattcttatttaaaacatattacctacgaaggtgcagcaaaa
cgatatgatgagattacggatgaaatcaccgagcgaattgatttcgaactaaaaaccata
gaaaattctggatatccaggatattttttgatagttgaagattttattagggaagcacga
aatatggatgtgtccgttggaccgggtcggggttcagcagcaggttccgtggttgcctat
tgtttatggattaccaacattgatccattaaaatatgatcttctttttgagcgtttccta
aatccggacagggtatccatgcctgatattgatattgactttgatgatgaaggcagaggt
agggtcatggactatgttatcaataaatatggagccaatcaggttgctcaaattattacg
tatggtactatggccgccaagtcttcaatcagagatacagcacgggttctggatttgccg
ttaaacgatgcggatcgtattgccaagcttatccccaccatgtccaaactgaacaaaatc
tttggggttgaagaatctgaattaaagaaaaagttccgttcggatgacttggaaaaagta
catgagctattaaatatttcagaaggggatgatttagaaggccagaccgtaaagatggcg
cgtgtgcttgaaggttcactcagaaatactggaatacatgcctgcggggtcatcattact
ccagatgatattaccaattttgttccagtggccaccgccaaggattctgatctgtacgta
acccaatttgataactctgttgtggaaagtgccggtctcctaaaaatggattttttgggg
ttgaagaccttgacactgattaaggataccgtgaaaattgtaaaggcaagaactggggtt
gaattggtcccagatgattttcctttggatgatgaaaaaacatacgagctgttccaacgt
ggggacaccatagggatattccaatatgaatccccgggaatgcaaaaacacatgaaaaac
ctgaaaccaacggtttttgatgaccttattgccatgaatgccttgtaccgacctggacca
atggaatacattcccagctttattgcccgtaagcatggggatgaagaaatcacctatgat
cttccagacatggaggaatatttaaaagagacctatggaatcacagtgtatcaggagcag
gtgatgttgctttcccagaaacttgccggattctccaaaggtgatgcggatgtcttgcga
aaagcaatgggtaaaaagatatttgccttacttcaaaaattgaggccacagtttctggat
ggtggtgaaaagaatggtcacccaagggatgtgctggaaaaaatctggaaagactgggaa
gcctttgcatcgtatgctttcaataaaagtcattccacctgctatgcctttattgcgtat
cagaccgcttaccttaaagcccactaccctgccgaatatatggcggcagtattatccaac
aacatgaacgatattaaacaggtgactttctttatggaagaatgtaaacgcatgggattg
gaagtgcttggaccagatgtaaatgaatcgtactacaaatttgccgtgaaccagagcaat
gcggttcgttttgggatgggcgctattaaaggcgttggacgttcggctgtggaaaccatt
gtagaaaacagaaaaaaagatgggccttataaatcggttttcgatttggcaaaacgggtt
gaactacgtgccgccaataaaaaatcttttgaaaatcttgctctggctggaggattcgat
tcctttggggatacccataggtcgcaatactttcatgacgaaggagatggaatatctttt
ctagaaaaagtaataaagtcagcagcaaaataccaggaaaacaaaaactcctctcaaatg
gatatgtttggaggaatgagtgaagcgcaaattgcggaacctgttgtcccaccatgtgaa
gattggggcaccatggaaaaattacgccgagaaaaagaggtcgtgggcatctatatttct
gggcatcctttggatgatttcaagaaagagattaccgccttttgcaatagtaatgtttcg
gcattttcaaatttagaccattatgttaatcatgaattgacagtagcaggagtaattaca
gatgtacaacatcgtatttccaaaaacggaaagggttggggtctttttactttggaagat
tacacagacactcatgaattccgaatttttggagaggaatatctgaaattcaggcatttt
ttaatgattaactcgtttgtacacgtaaaagcatttgtccgagaaggatggaccaataga
gaaactggtaaaaaaggagaccctagattgcagttcaatgattttaaacagcttcaggac
gttatggattcctatgccaaaaaactgaccattaaactggatatagaccgcttacaagaa
aaacggatacaagtcttaaaggacaccttaatatcccataaaggagatcacaccctcaat
tttgtcgtttatgaaatggaagatgaaataaagttgaatttgtcgagcagaaagcaaaag
gtaaaaatcaacagtgaactcctttccgcattggaagagaatgagatacattacaaattg
aactaa
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