Flagellimonas sp. CMM7: LV704_11385
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Entry
LV704_11385 CDS
T08590
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
flb
Flagellimonas sp. CMM7
Pathway
flb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
flb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LV704_11385
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
flb03019
]
LV704_11385
Enzymes [BR:
flb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LV704_11385
Messenger RNA biogenesis [BR:
flb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LV704_11385
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Helicase_C_2
Cas3-like_C_2
Utp25_C
ERCC3_RAD25_C
CMS1
Motif
Other DBs
NCBI-ProteinID:
UII78271
LinkDB
All DBs
Position
complement(2495764..2497032)
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AA seq
422 aa
AA seq
DB search
MTFQDLKLIPSLLKALRDENYTEPTSIQAKSIPLVLNKEDVLGSAQTGTGKTAAFAIPII
QHLVNDQQNKNGKRRISTLVITPTRELAIQIGESFTAYGKYTTITNTVIFGGVNQRAQTN
VLKQGVDVLIATPGRLLDLMNQGYISLRDVKYFVLDEADRMLDMGFIHDIKKILAKLPKQ
RQSLFFSATMPKNILSLSQQILINPKKVAVNPVSSTADTIQQFLYTTNKQDKGKLLLHIL
ENPELEQVLLFSRTKHGANRIVRNLQKKKIECAAIHGDKSQNQRQKALKNFKADSIRVLV
ATDIAARGIDIDKLRYVINYDIPNEPETYVHRIGRCGRAGEEGTSISICEPEENAYIRDI
EKLIKQKIEVVSDNPFPQTDRPMNATEKKALQKEKQRQKQEFFANRNKKRGSQNPGFRRK
KR
NT seq
1269 nt
NT seq
+upstream
nt +downstream
nt
atgacattccaagatttaaaattgattccttccttactcaaagctttgagagatgaaaac
tatacagagcccacatctattcaagctaaatccattccactggttttaaacaaagaagat
gtcttgggcagtgctcaaactggtacaggaaagactgcggcttttgccattcccattatt
caacacttggtgaatgatcaacaaaataaaaatggtaaacgaaggatttccacactggtg
attactcctacccgtgagcttgccatacaaattggagaaagctttacagcctatggcaaa
tacaccacaatcaccaatacagtcatatttggaggcgtaaatcaaagggctcaaaccaat
gtattgaaacaaggtgtagatgtcttaattgccactcctggccgtctactggatttaatg
aaccaaggatatatctctttacgggatgtcaagtattttgtactggatgaagctgaccgt
atgctggatatgggctttatacacgacattaaaaaaatcttggccaaattacccaaacaa
agacagtccttatttttctcggccaccatgcccaaaaatattttgagcctgtcccaacaa
atcttgatcaatccaaagaaggttgccgtaaaccctgtttcttctacagcagatacaatt
caacagtttttatataccaccaacaaacaagacaaaggcaaactgcttttgcatattcta
gagaatcctgaattggagcaagtgctgcttttttcaaggacgaagcacggggcaaatcgt
attgtgcgcaatctccagaagaaaaaaattgaatgtgcagccattcatggcgacaagtct
caaaaccaacggcaaaaagcactaaaaaacttcaaagctgatagcatcagagtattggtg
gctactgatattgcagctcgtggtattgacatagacaagcttcgttacgtgatcaactat
gatatacccaatgagcctgaaacgtatgtgcatagaattgggcgctgtggacgtgctggt
gaggaaggcacttccatttcaatctgtgagccagaagaaaacgcatatataagggatatt
gaaaagctcatcaaacaaaaaatcgaagttgtgagtgacaatccctttccgcagacagac
agacctatgaatgccactgaaaagaaggcattacagaaggaaaagcaacgacagaagcaa
gaattttttgccaatcgcaacaaaaaaagaggttctcaaaatcctggtttccgaagaaag
aaaaggtaa
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