Flagellimonas sp. CMM7: LV704_16240
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Entry
LV704_16240 CDS
T08590
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
flb
Flagellimonas sp. CMM7
Pathway
flb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
flb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LV704_16240
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
flb03019
]
LV704_16240
03009 Ribosome biogenesis [BR:
flb03009
]
LV704_16240
Enzymes [BR:
flb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LV704_16240
Messenger RNA biogenesis [BR:
flb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LV704_16240
Ribosome biogenesis [BR:
flb03009
]
Prokaryotic type
rRNA helicases
LV704_16240
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
AAA_22
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
UII79197
LinkDB
All DBs
Position
complement(3599775..3601538)
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AA seq
587 aa
AA seq
DB search
MTKFETLGLDKPLLDAISDLGFESPSEVQEKAIPILLEQETDLVALAQTGTGKTAAFGFP
MIQKIQSESRTTQGLILSPTRELCLQITNELKLYSKYVKGLNTVAIYGGASITDQARQIK
RGAQIIVATPGRMKDMIGRKMVDISKIDYCVLDEADEMLNMGFFEDIKDILSNTPKEKFT
WLFSATMPKEVSTIAKKFMHKPQEITVGTKNAGASTVQHEYYVVGGRDRYSALKRLADAN
PGIFSVIFCRTKRDTQKVAEKLIEDGYNAGALHGDLSQNQRDLVMNSFRKKQVQMLVATD
VAARGIDVDDITHVINYQLPDEIETYTHRSGRTGRAGKSGISMVIVTRSELRKIKSIEGK
IQQSFLSKKIPTGIEICEIQLYHLASKIKETEINPEIDNYLPAINDVLEGVDRDELLKKI
ISVEFTRFYNYYSKTRDLNSSEDGRDRGERRERSKGDNTQSNGSVRYFINVGERDGYDWM
SLKDFLRDTLNLEKEDVFNVDTKDSFSFFNTDAQVTDHVLQTFTEFKVEGRFINVEVSKN
PGGSGRGGGRKRDRSRGHRKGGDNKSFRGGRKNNSGKRGGKKRPGFY
NT seq
1764 nt
NT seq
+upstream
nt +downstream
nt
atgacaaaatttgaaaccctagggttggacaaaccccttttggacgctatttccgattta
ggatttgaatctccatcagaagtacaagaaaaagctatcccaattttattggaacaagag
accgacctagtcgcacttgcgcaaacgggaacgggtaaaactgctgcctttggttttccc
atgatccaaaaaattcaatcagaaagcagaacaactcaaggactcatcttatctccaaca
cgtgagctctgtttgcaaattacaaatgagctaaaattatactccaaatacgttaaaggt
cttaatactgtagccatttatggtggagccagcattaccgatcaagctaggcaaataaaa
cgcggagcgcagattattgtagccactcccgggcgtatgaaggatatgattggacgaaaa
atggttgatatttctaaaattgactattgcgtgctagatgaagcagatgaaatgttgaac
atgggcttctttgaagacataaaggacattttatccaacacaccaaaagaaaaatttaca
tggttgttttccgcaactatgcccaaagaagtttctaccattgctaagaagttcatgcat
aaaccccaagaaattactgttgggactaaaaatgccggagcttcaacggtgcaacatgag
tactatgtagttggtgggcgtgatcgttattctgcgcttaaacgtcttgcagatgccaat
cccggtattttctcagtgatattctgtagaacaaagagagatacccaaaaagttgctgaa
aagcttattgaggatggatacaatgcgggagcacttcatggagacctaagtcaaaatcag
cgggatttggtcatgaattccttccgtaaaaaacaagtacagatgcttgtggcaacggat
gttgctgccaggggaatagatgttgatgatataacacatgttatcaactatcaattacct
gatgaaatagaaacatatacgcaccgaagtggtcgtacaggtcgtgcaggaaaatcaggg
atttcaatggtaatcgtaacgcgttcggagctacgaaagattaaatccatagaaggtaaa
atccagcaatcttttctatccaagaaaattccaactggtattgagatttgtgagatacaa
ttataccatttagctagcaaaatcaaagaaactgagataaatcctgaaatagacaattat
ctaccggccataaacgatgttttggaaggtgttgatagagatgaattgctcaaaaaaatt
atttcagtagaatttacccgtttctataactattacagtaaaaccagagatttaaattca
tcagaagatggaagagatcgaggagaaagaagggaacgttccaaaggtgacaacacgcag
tcaaacggttctgtgcgctactttatcaatgtaggagaacgcgatggttacgactggatg
tctttgaaagactttttacgtgataccttaaaccttgaaaaagaagacgtgttcaacgta
gataccaaggatagtttctcctttttcaacacagatgcccaggtaacagatcatgtcctt
caaacttttacagaatttaaggttgagggtcgttttatcaatgttgaagtttccaaaaat
cctggaggttcaggaagaggcggtggtagaaaacgagatagaagtagaggacatagaaaa
ggtggggacaataaatcctttagaggaggtagaaaaaataactccggtaaacgcggcggt
aaaaaacgaccaggcttttattag
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