Flavihumibacter fluvii: KJS93_10025
Help
Entry
KJS93_10025 CDS
T07958
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
flc
Flavihumibacter fluvii
Pathway
flc03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
flc00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
KJS93_10025 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
flc03021
]
KJS93_10025 (rpoC)
03400 DNA repair and recombination proteins [BR:
flc03400
]
KJS93_10025 (rpoC)
Enzymes [BR:
flc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
KJS93_10025 (rpoC)
Transcription machinery [BR:
flc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
KJS93_10025 (rpoC)
DNA repair and recombination proteins [BR:
flc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
KJS93_10025 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Apocytochr_F_C
Biotin_lipoyl_2
Biotin_lipoyl
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
ULQ54656
LinkDB
All DBs
Position
complement(2292587..2296879)
Genome browser
AA seq
1430 aa
AA seq
DB search
MAIKKENRPKFNFSKITIGLASPDSILEKSYGEVLKPETINYRTYKPERDGLFCERIFGP
VKDYECACGKYKRIRYKGIVCDRCGVEVTEKKVRRERMGHIKLVVPVVHIWYFKSLPNKI
GYLLGMSSKKLESIVYYERFVVIQPGIRTDKGQNVGDLLTEEEYLDILETLPKDNQYLPD
EDPNKFMAKMGAEAVHDLLQRIDLDQLSYDLRNAAATETSQQRKADALKRLSVVEAFRDA
NSRITNRPEWMVMQYIPVIPPELRPLVPLDGGRFASSDLNDLYRRVIIRNNRLKRLLEIK
APEVILRNEKRMLQEAIDSLFDNSRKSNAVKAEGGRALKSLSDVLKGKQGRFRQNLLGKR
VDYSGRSVIVVGPELKMHECGLPKDMAAELFKPFIIRKLIERGIVKTVKSARKLVDKKEP
VIWDILENILKGHPVMLNRAPTLHRLSIQAFQPKLIEGKAIQLHPLVTTAFNADFDGDQM
AVHVPLSNAAVLEAQLLMLSSHNILNPQNGTPITLPSQDMVLGLYYITKGKKTTPTEKVR
GEGMSFYSPEEVIIAYNEDRIDLHANIKVRTNVRINGALEKKLIETTVGRVLFNQHVPAE
VGFVNALLTKKSLREIIGDIIKITNVPKTAKFLDDIKTLGFRMAFRGGLSFNPQDLIIPH
VKTELLEQAKVEVDEVWDNYNMGLITNNERYNQIVDIWSRVDTRITETLIREMQNDKQGF
NSVFMMLDSGARGSKQQVKQLAGIRGLMAKPRKSGSTGSEIIENPILSNFKGGLNVLDYF
ISTHGARKGLADTALKTADAGYLTRRLVDVSQDVVISEEDCGTLRGIATSALKDNEDVIE
PLKDRIEGRNSLHNIYDPLTDELIVTAGEEITADTAQRIEDSGIEIVEIRSVLTCESKRG
VCVKCYGKNLATGYTAQNGDAVGIIAAQSIGEPGTQLTLRTFHVGGVAGSASVESSLLAK
FDGTIQFDGLRTTTTENAEGEKVQVVIGRTGEIRNMDVANDRLLNVVNIPYGATLTVKDG
QKVKKGDVICTWDPYNNVIIAEIAGSIKLDNVLDGITYREEADEQTGHREKVVIETKDKT
KIPSIIVESGKEIKHYNLPVGSHIIMEEGEEVKAGQVVVKIPRVLGKLRDITGGLPRVTE
LFEARNPGNPAIVSEIDGVVAFGAIKRGNREIIVEARDGVTKKYLVPLTRQILAQDGDFV
KAGVALSDGQIAPSDILSIKGPFAVQEYVVNEIQEVYRLQGVRINDKHIEVIVRQMMKKV
SIVDPGDTKFLEDDTVDKFDFIEENDWIYDKKVVTDPGESTKMRAGQIVNLRDLREENSI
LRRSDRKLVEYRDAQSATSHPLLLGITKASLGVQSWISAASFQETTKVLSTAAINGKTDD
MMGLKENVITGHQIPAGTGLREFENMIVGSKEEYELLQTTREAMNFDEEE
NT seq
4293 nt
NT seq
+upstream
nt +downstream
nt
atggctatcaaaaaagaaaatcgacccaagttcaatttctcgaaaatcacgattggactg
gcatcacccgattcaatcctggaaaagagttacggtgaagtgttgaagcctgaaaccatt
aactaccggacctacaaacccgagcgcgacggtcttttctgtgaaaggatcttcggaccg
gtgaaagattacgaatgtgcctgtggaaaatacaagcgtatccgttataaaggcatcgtg
tgtgaccgttgtggtgttgaggtaactgaaaagaaagtccgccgtgagcgcatgggccac
attaaactggtggttcctgttgtacacatctggtacttcaagagtttgccgaataaaatc
ggttacctgcttggcatgagttccaagaaactcgaaagtattgtttattacgaaagattt
gtggttatccaacctggtatccgtaccgataagggtcagaatgtgggcgaccttttaact
gaagaagaatacctcgatatattagaaaccctgccaaaagataaccagtacctgccggat
gaagatccgaacaagttcatggcgaaaatgggtgcagaagcggtacatgacctgctgcag
aggattgacctcgaccagctgagttatgacctgcgtaatgccgcagccactgaaacatcc
caacaacgtaaggcagacgccctgaagcgcctgagcgtggtggaagctttccgtgatgcc
aacagccgaattaccaaccgtccggagtggatggtgatgcaatatattccagttatcccc
cctgaattacgtccgctcgttcctttggatggcggtcgtttcgcgtcttccgacctgaac
gatctttatcgccgcgtgatcatccggaacaatcgcttgaagcgtttgctcgagatcaag
gcaccggaagtaattcttcgtaatgaaaagaggatgctgcaggaagccattgactcattg
tttgataacagccgtaagtccaatgctgttaaagcggaaggcggacgtgcgctgaagtca
ttgtctgatgtactgaaaggtaaacaaggccgtttccgccagaacctgttgggtaaacgt
gttgactattctggtcgttctgtaatcgttgtagggccagaactgaaaatgcatgagtgc
gggttgccgaaagacatggctgctgagctcttcaaaccgtttattatccgtaaactgatt
gaaagaggcattgttaaaactgtaaagagtgcccgtaaactggtcgataaaaaagaaccg
gtgatctgggatattctagaaaatatcctgaaaggacaccctgtaatgctgaaccgtgcc
ccgacactgcaccgtttgtccatccaggccttccagccaaaactaattgaaggaaaagcg
atccagcttcacccgctcgtaaccaccgccttcaacgcggattttgatggtgaccagatg
gcggtgcacgttccgttaagtaacgcagccgttctggaagcccagttgctgatgctttct
tcacacaatatccttaacccgcagaacggtacgccaattaccctgccttcacaggacatg
gtactcggtctgtactacattaccaaaggaaagaagaccacgccaactgaaaaagttcgc
ggtgaaggcatgtccttctattctcctgaggaagtgatcattgcatataatgaggaccgg
attgacctacatgcaaacatcaaggtgagaaccaatgtccgcatcaatggtgcacttgaa
aagaaactgatcgaaactacagttggccgtgtattgttcaaccaacacgttcctgcagaa
gttggatttgtgaacgctttgctgaccaagaaaagccttcgggaaatcattggcgacatc
attaagatcaccaacgttccaaagacggcaaaattcctggatgatatcaagaccctcggt
tttcgcatggccttccgtggtggcttgtcgttcaacccgcaggatctgatcattccgcat
gtaaagacagaattgttggagcaggctaaagttgaagttgatgaagtatgggacaactat
aatatgggtctcattaccaataacgaacgatacaaccaaattgtagacatctggtcaagg
gtagatacccgtatcacggagacccttattcgcgaaatgcaaaatgacaagcagggtttc
aactctgtatttatgatgctggattctggtgcccgtggttctaagcagcaggtaaaacag
ctggctggcatcaggggtctgatggctaaaccgcgtaagagtggttcaaccgggtcggag
atcattgaaaacccgatcctgtccaactttaaaggtggtttgaacgtattggattatttc
atctctacgcacggtgcgcgtaaaggtttggccgatactgcccttaaaacagcggatgcc
ggttacctgacccgtcgtcttgtggacgtatcacaggatgtggtgatttcagaagaggat
tgtggaaccctgcgtggaattgccacttcagccctgaaagacaacgaagatgttatcgaa
ccactgaaagaccgtattgaaggaagaaattctctccataatatttatgatccgctgact
gatgagctgattgtcactgcaggtgaagaaattaccgctgatacggcacagcgcattgaa
gattcaggtatcgagattgttgaaatacgttctgtactaacctgtgaaagcaagcgtggt
gtatgtgtgaaatgttacggtaaaaacctggctacaggttacaccgcacaaaatggtgat
gcagtaggaatcatcgcagcacagtccatcggtgaaccgggtacacagttgaccctccgt
accttccacgtgggtggtgtggctggttctgcatctgtagaatccagtttgctggccaag
ttcgacggaaccatccaatttgatggtctgcgtacaacgaccactgaaaatgcggaaggc
gaaaaagttcaggtagttatcggtcgtaccggtgagatccgtaatatggatgtggccaat
gaccgtctgctgaacgtggtgaatattccttatggtgccaccctgactgtaaaagacggc
cagaaggtgaagaaaggtgatgtgatctgtacatgggatccttataataacgtcatcatt
gcagagatcgctggttcaattaaacttgataacgtattggatggtatcacctaccgcgaa
gaggccgatgaacaaactggtcaccgtgagaaagtggttatcgaaacaaaagataagacg
aagatcccttccattatcgttgaaagtggaaaggaaattaagcactataaccttcctgta
ggatcccatatcattatggaagaaggtgaggaggtgaaagctggtcaggtggttgtgaag
atcccccgcgttctcggaaaactccgcgatatcacaggtggtctgccgcgtgttactgaa
ctttttgaagcccgtaacccaggtaaccctgccattgtttctgaaattgatggtgtagta
gcctttggtgcaattaaaaggggtaaccgcgaaatcattgtggaagcacgggatggcgta
accaagaaataccttgtaccattaacgcgccagatccttgctcaggatggtgactttgtg
aaagccggtgtggccctgtctgacggacaaattgccccaagtgatatcctgtcaatcaaa
ggaccatttgccgttcaggagtatgtggtgaatgaaatccaggaagtttatcgtttgcag
ggtgtacgtattaatgataaacacattgaggtgatcgttcgccagatgatgaaaaaagta
tctattgtggatccgggagatacaaaattcctggaagatgataccgtagataaatttgac
ttcattgaggagaacgactggatatatgataaaaaagtagttactgatccgggcgaaagt
actaaaatgcgtgccgggcagattgttaacctgcgtgacctgcgtgaggaaaactctatc
ctgcgtcgttcagacaggaaactggttgaataccgagatgcacaatccgctacttcgcat
ccgcttttgttgggtattaccaaggcgtctctgggtgtacaaagctggatatcagcagca
tccttccaggaaacaacgaaggtcttaagtacagcggccatcaatggtaaaacagatgat
atgatgggcttgaaagagaacgtcatcacgggccatcagatccctgcaggaaccggattg
cgtgaattcgagaatatgatcgtaggcagcaaggaagaatacgaactcctgcaaactacc
agggaagccatgaattttgatgaagaggaataa
DBGET
integrated database retrieval system
